miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 5' -63.9 NC_003387.1 + 24566 0.66 0.330466
Target:  5'- gGCGaGCCGAgcugGCCgGGCUCG-AUCGUgGg -3'
miRNA:   3'- -UGC-CGGCU----UGGgCCGGGCgUAGCGgC- -5'
12791 5' -63.9 NC_003387.1 + 464 0.66 0.330466
Target:  5'- gGCGGCCGAcggcgaCCGGCgcgagCUGC-UCGUCGc -3'
miRNA:   3'- -UGCCGGCUug----GGCCG-----GGCGuAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 23822 0.66 0.330466
Target:  5'- uCGGgCGGugGCCCGgcGCCCGCGccuaagcCGCCGc -3'
miRNA:   3'- uGCCgGCU--UGGGC--CGGGCGUa------GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 27289 0.66 0.330466
Target:  5'- aAC-GCCGcACUggCGGCCCuugagagccGCGUCGCCGu -3'
miRNA:   3'- -UGcCGGCuUGG--GCCGGG---------CGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 32847 0.66 0.330466
Target:  5'- -gGGCgGGGC--GGuUCCGCGUCGCCGa -3'
miRNA:   3'- ugCCGgCUUGggCC-GGGCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 42894 0.66 0.3282
Target:  5'- -aGGCCGGgggccagcacaaaaGCgCaGCCUGCAgCGCCGg -3'
miRNA:   3'- ugCCGGCU--------------UGgGcCGGGCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 11416 0.66 0.325196
Target:  5'- uCGGCCccGAggugcugucgucgguGCUCGuGCCCGCGcugcagcUCGCCGc -3'
miRNA:   3'- uGCCGG--CU---------------UGGGC-CGGGCGU-------AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 17739 0.66 0.323702
Target:  5'- cCGGCCGGGCCgccaggGGCCacaccgcucaucacgGCGUCgGCCGa -3'
miRNA:   3'- uGCCGGCUUGGg-----CCGGg--------------CGUAG-CGGC- -5'
12791 5' -63.9 NC_003387.1 + 48949 0.66 0.322957
Target:  5'- gGCGGgCGGgcuGCUCGGCguaccaCUGCGUCGUCa -3'
miRNA:   3'- -UGCCgGCU---UGGGCCG------GGCGUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 32770 0.66 0.322957
Target:  5'- gAUGcGCaaccACCCGGCCgCGUAcCGCCGg -3'
miRNA:   3'- -UGC-CGgcu-UGGGCCGG-GCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 52222 0.66 0.322957
Target:  5'- cGCGGUCGccACgCgGGCgCGCAUCGCg- -3'
miRNA:   3'- -UGCCGGCu-UG-GgCCGgGCGUAGCGgc -5'
12791 5' -63.9 NC_003387.1 + 21987 0.66 0.322957
Target:  5'- uGCGcCCGGugauCCCGGCCaGUAUCagGCCGu -3'
miRNA:   3'- -UGCcGGCUu---GGGCCGGgCGUAG--CGGC- -5'
12791 5' -63.9 NC_003387.1 + 30554 0.66 0.322957
Target:  5'- cAUGGaCCGccGCCgCGGCCgGUAcgCGCCGu -3'
miRNA:   3'- -UGCC-GGCu-UGG-GCCGGgCGUa-GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 14539 0.66 0.322957
Target:  5'- gGCGGCCGGGCCguUGcGCuuGUAcUGCUGa -3'
miRNA:   3'- -UGCCGGCUUGG--GC-CGggCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 31352 0.66 0.322957
Target:  5'- -gGGUCGAACagcaCCGGCCaggGCAgCGUCGg -3'
miRNA:   3'- ugCCGGCUUG----GGCCGGg--CGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 9840 0.66 0.322957
Target:  5'- cUGGCC---CCCGGCCU-UGUCGCCGu -3'
miRNA:   3'- uGCCGGcuuGGGCCGGGcGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 25580 0.66 0.318514
Target:  5'- gGCGgcGCCGAcCCCGGCgggcacggccucgacCCGCAgUGCCu -3'
miRNA:   3'- -UGC--CGGCUuGGGCCG---------------GGCGUaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 1823 0.66 0.315577
Target:  5'- cGCGGCCGAuauggcgaaggGCUgCGGCCUguuugagaacgGCGUcaaCGCCGa -3'
miRNA:   3'- -UGCCGGCU-----------UGG-GCCGGG-----------CGUA---GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1952 0.66 0.315577
Target:  5'- cCGGCCgcGggUCUGGCCgGgCAgCGCCa -3'
miRNA:   3'- uGCCGG--CuuGGGCCGGgC-GUaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 31765 0.66 0.315577
Target:  5'- cUGGUCG---CCGaGCCCGCAccgCGCCGa -3'
miRNA:   3'- uGCCGGCuugGGC-CGGGCGUa--GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.