miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 5' -63.9 NC_003387.1 + 52627 0.67 0.266844
Target:  5'- uGCGGUuaugcaggggaguCGAGCCagcaaacGCCCGCggCGCCGa -3'
miRNA:   3'- -UGCCG-------------GCUUGGgc-----CGGGCGuaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 52222 0.66 0.322957
Target:  5'- cGCGGUCGccACgCgGGCgCGCAUCGCg- -3'
miRNA:   3'- -UGCCGGCu-UG-GgCCGgGCGUAGCGgc -5'
12791 5' -63.9 NC_003387.1 + 52096 0.67 0.251193
Target:  5'- cGCGGCggCGAcgcugcccucgcccuGCUCGGCCUGagcgucaAUCGCCGc -3'
miRNA:   3'- -UGCCG--GCU---------------UGGGCCGGGCg------UAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 51958 0.7 0.15415
Target:  5'- -aGGUCGAACCCgaGGCCCaUcgCGCCa -3'
miRNA:   3'- ugCCGGCUUGGG--CCGGGcGuaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 51924 0.7 0.162324
Target:  5'- cUGGCCGAcaucaucgugACCCGGCUCGCugagaaGCUGc -3'
miRNA:   3'- uGCCGGCU----------UGGGCCGGGCGuag---CGGC- -5'
12791 5' -63.9 NC_003387.1 + 51615 0.79 0.035871
Target:  5'- cACGGCCGAACCCGcGCUCGCGggCaCCGa -3'
miRNA:   3'- -UGCCGGCUUGGGC-CGGGCGUa-GcGGC- -5'
12791 5' -63.9 NC_003387.1 + 51401 0.68 0.242763
Target:  5'- uCGGCCGGugACCgGcgagcGCCUGCggCGCCGc -3'
miRNA:   3'- uGCCGGCU--UGGgC-----CGGGCGuaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 51007 0.69 0.209276
Target:  5'- gAUGcGCC--GCCCGGCCCGCucagcgauccaGUCGaCCGc -3'
miRNA:   3'- -UGC-CGGcuUGGGCCGGGCG-----------UAGC-GGC- -5'
12791 5' -63.9 NC_003387.1 + 50773 0.69 0.199031
Target:  5'- gGCGGuCCcAGCCCcaaccGCCUGCGUCGCgGa -3'
miRNA:   3'- -UGCC-GGcUUGGGc----CGGGCGUAGCGgC- -5'
12791 5' -63.9 NC_003387.1 + 50462 0.81 0.026435
Target:  5'- uCGaGCCGAcCCCGGCCCGCGaggUCGUCGg -3'
miRNA:   3'- uGC-CGGCUuGGGCCGGGCGU---AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 50196 0.68 0.225493
Target:  5'- cGCGuGCgGAACaCCGGCCCcuCAUCaGUCGg -3'
miRNA:   3'- -UGC-CGgCUUG-GGCCGGGc-GUAG-CGGC- -5'
12791 5' -63.9 NC_003387.1 + 50004 0.82 0.022367
Target:  5'- gUGGCCu-GCCCGccGCCCGCGUCGCCGa -3'
miRNA:   3'- uGCCGGcuUGGGC--CGGGCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 49808 0.66 0.308325
Target:  5'- gACGagaGCCucGCCCgcGGCCUGCcgCGCCc -3'
miRNA:   3'- -UGC---CGGcuUGGG--CCGGGCGuaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 49487 0.69 0.193585
Target:  5'- uCGGCCGGugcgcccGCCCGGCgucgaCGUGUCGCa- -3'
miRNA:   3'- uGCCGGCU-------UGGGCCGg----GCGUAGCGgc -5'
12791 5' -63.9 NC_003387.1 + 49236 0.68 0.214567
Target:  5'- gGCGGCCGAGCggcugcucgacgCCGGggugaCgCGCAUCGaCCGc -3'
miRNA:   3'- -UGCCGGCUUG------------GGCCg----G-GCGUAGC-GGC- -5'
12791 5' -63.9 NC_003387.1 + 49191 0.67 0.267486
Target:  5'- gGCGGCCGucGACguugCUGaGCCCGCAacggaUCuGCCGg -3'
miRNA:   3'- -UGCCGGC--UUG----GGC-CGGGCGU-----AG-CGGC- -5'
12791 5' -63.9 NC_003387.1 + 48949 0.66 0.322957
Target:  5'- gGCGGgCGGgcuGCUCGGCguaccaCUGCGUCGUCa -3'
miRNA:   3'- -UGCCgGCU---UGGGCCG------GGCGUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 48287 0.67 0.280593
Target:  5'- uCGGCgCGGGCUCGGCgaaCGCcUUGCCc -3'
miRNA:   3'- uGCCG-GCUUGGGCCGg--GCGuAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 48214 0.69 0.192609
Target:  5'- gGCGGCCGAggugACCCGcacgaucgugucgcGCCCG-GUCgGCCGc -3'
miRNA:   3'- -UGCCGGCU----UGGGC--------------CGGGCgUAG-CGGC- -5'
12791 5' -63.9 NC_003387.1 + 48169 0.66 0.315577
Target:  5'- cGCGGUCGcGCaggcgcaGGCCCGCAaggUGCCc -3'
miRNA:   3'- -UGCCGGCuUGgg-----CCGGGCGUa--GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.