miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 5' -63.9 NC_003387.1 + 34382 0.67 0.273977
Target:  5'- cGCGGUCuGACCggcgggcacgaCGGCCaCGCcGUUGCCGg -3'
miRNA:   3'- -UGCCGGcUUGG-----------GCCGG-GCG-UAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 7088 0.66 0.294204
Target:  5'- gGCGGCCGAuCUUcGCCuCGCcGUaCGCCGa -3'
miRNA:   3'- -UGCCGGCUuGGGcCGG-GCG-UA-GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 21993 0.66 0.286655
Target:  5'- gACGaGCCGGgucaccuGCCCGGCugagcgccCCGCAggCGCaCGa -3'
miRNA:   3'- -UGC-CGGCU-------UGGGCCG--------GGCGUa-GCG-GC- -5'
12791 5' -63.9 NC_003387.1 + 2537 0.67 0.280593
Target:  5'- --uGCCGu-CCCGGUCgCGCAggaugaacUCGCCGg -3'
miRNA:   3'- ugcCGGCuuGGGCCGG-GCGU--------AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 17538 0.67 0.280593
Target:  5'- uCGGCCGGuAUCCGGUCguaccguucgCGCGUCaGCCc -3'
miRNA:   3'- uGCCGGCU-UGGGCCGG----------GCGUAG-CGGc -5'
12791 5' -63.9 NC_003387.1 + 48287 0.67 0.280593
Target:  5'- uCGGCgCGGGCUCGGCgaaCGCcUUGCCc -3'
miRNA:   3'- uGCCG-GCUUGGGCCGg--GCGuAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 25091 0.67 0.280593
Target:  5'- cACGaGUCGAACgccagCCGGUCgGUGUCGUCGa -3'
miRNA:   3'- -UGC-CGGCUUG-----GGCCGGgCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 36724 0.67 0.279926
Target:  5'- gGCGGCCGuACCggaccagccagugCGGCCCGaAUUGUCc -3'
miRNA:   3'- -UGCCGGCuUGG-------------GCCGGGCgUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 1277 0.67 0.278595
Target:  5'- uGCGGCUGcgcggcguucGACCggcgcaguucgaggCGGCgCCGCAggcgcUCGCCGg -3'
miRNA:   3'- -UGCCGGC----------UUGG--------------GCCG-GGCGU-----AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 7640 0.66 0.304035
Target:  5'- gGCcGCCGAACaCCGGCCCaggacggcccucgacGCGcUCGgCGa -3'
miRNA:   3'- -UGcCGGCUUG-GGCCGGG---------------CGU-AGCgGC- -5'
12791 5' -63.9 NC_003387.1 + 9981 0.66 0.308325
Target:  5'- cGCaGCCGAuccgagcacGCCCugacgagcaGGUCgGCGUUGCCGg -3'
miRNA:   3'- -UGcCGGCU---------UGGG---------CCGGgCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 44914 0.66 0.308325
Target:  5'- uCGGCCGccaggcguugcAGCUCGGCCUGCAccucgggcagcUUGCgGa -3'
miRNA:   3'- uGCCGGC-----------UUGGGCCGGGCGU-----------AGCGgC- -5'
12791 5' -63.9 NC_003387.1 + 52222 0.66 0.322957
Target:  5'- cGCGGUCGccACgCgGGCgCGCAUCGCg- -3'
miRNA:   3'- -UGCCGGCu-UG-GgCCGgGCGUAGCGgc -5'
12791 5' -63.9 NC_003387.1 + 14539 0.66 0.322957
Target:  5'- gGCGGCCGGGCCguUGcGCuuGUAcUGCUGa -3'
miRNA:   3'- -UGCCGGCUUGG--GC-CGggCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 48949 0.66 0.322957
Target:  5'- gGCGGgCGGgcuGCUCGGCguaccaCUGCGUCGUCa -3'
miRNA:   3'- -UGCCgGCU---UGGGCCG------GGCGUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 31352 0.66 0.322957
Target:  5'- -gGGUCGAACagcaCCGGCCaggGCAgCGUCGg -3'
miRNA:   3'- ugCCGGCUUG----GGCCGGg--CGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 9840 0.66 0.322957
Target:  5'- cUGGCC---CCCGGCCU-UGUCGCCGu -3'
miRNA:   3'- uGCCGGcuuGGGCCGGGcGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1952 0.66 0.315577
Target:  5'- cCGGCCgcGggUCUGGCCgGgCAgCGCCa -3'
miRNA:   3'- uGCCGG--CuuGGGCCGGgC-GUaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 26143 0.66 0.31121
Target:  5'- cACGaGCCagcauGCCCGGCaCCGCccgcaagggcgucauGUCGUCGc -3'
miRNA:   3'- -UGC-CGGcu---UGGGCCG-GGCG---------------UAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 47193 0.66 0.308325
Target:  5'- --cGCCGAACUUcGCCCGC-UCGCgGg -3'
miRNA:   3'- ugcCGGCUUGGGcCGGGCGuAGCGgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.