miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 5' -58.6 NC_003387.1 + 45249 0.66 0.553317
Target:  5'- gGGUGCgCGGCUcggugaucGCcUGGCCcAUCGCGu -3'
miRNA:   3'- aCUACGgGCUGG--------UGuGCCGG-UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 43198 0.66 0.553317
Target:  5'- cGGcUGgCCGGgUACGCGGCgAUCgGCGa -3'
miRNA:   3'- aCU-ACgGGCUgGUGUGCCGgUAG-CGC- -5'
12796 5' -58.6 NC_003387.1 + 9505 0.66 0.553317
Target:  5'- cGAguacCCCGACgGCACgaccguGGCCGUCaaGCGg -3'
miRNA:   3'- aCUac--GGGCUGgUGUG------CCGGUAG--CGC- -5'
12796 5' -58.6 NC_003387.1 + 40335 0.66 0.553317
Target:  5'- uUGAUcGCCUgcagcagcggcaGAUUGCG-GGCCGUCGCGg -3'
miRNA:   3'- -ACUA-CGGG------------CUGGUGUgCCGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 37141 0.66 0.553317
Target:  5'- gUGuUGCCCGGCa--GCaGCCAggCGCGa -3'
miRNA:   3'- -ACuACGGGCUGgugUGcCGGUa-GCGC- -5'
12796 5' -58.6 NC_003387.1 + 39009 0.66 0.553317
Target:  5'- cUGAUcGCCCugcGCCGcCugGGCCG-CGCu -3'
miRNA:   3'- -ACUA-CGGGc--UGGU-GugCCGGUaGCGc -5'
12796 5' -58.6 NC_003387.1 + 23479 0.66 0.553317
Target:  5'- --cUGCUCGACCuuguCGGCCGggaUCGUGc -3'
miRNA:   3'- acuACGGGCUGGugu-GCCGGU---AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 26190 0.66 0.553317
Target:  5'- -cGUGCuuG-CCugACGGCuCGUCGUc -3'
miRNA:   3'- acUACGggCuGGugUGCCG-GUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 31251 0.66 0.553317
Target:  5'- ---gGCCCGACCgGCGCGgGCUG-CGCc -3'
miRNA:   3'- acuaCGGGCUGG-UGUGC-CGGUaGCGc -5'
12796 5' -58.6 NC_003387.1 + 36783 0.66 0.553317
Target:  5'- aGgcGCgagUCGGCCGgGCGGCCuucucaccgauaAUCGCGg -3'
miRNA:   3'- aCuaCG---GGCUGGUgUGCCGG------------UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 43388 0.66 0.553317
Target:  5'- cUGGUGCUCGACgACgucgaccucgGgGGCCgugucaGUCGCGu -3'
miRNA:   3'- -ACUACGGGCUGgUG----------UgCCGG------UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 35625 0.66 0.553317
Target:  5'- cGAggaGCCCG-CCGagGCGGCCGg-GCGg -3'
miRNA:   3'- aCUa--CGGGCuGGUg-UGCCGGUagCGC- -5'
12796 5' -58.6 NC_003387.1 + 188 0.66 0.542798
Target:  5'- cGGUGCUCGACU---CGGCC--CGCGa -3'
miRNA:   3'- aCUACGGGCUGGuguGCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 46300 0.66 0.542798
Target:  5'- cGAcgGCCUGGCC-CGCaGUCAcCGCGg -3'
miRNA:   3'- aCUa-CGGGCUGGuGUGcCGGUaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 11573 0.66 0.542798
Target:  5'- ---cGCCCuGACacuCGCAgCGGCCGUCgGCGc -3'
miRNA:   3'- acuaCGGG-CUG---GUGU-GCCGGUAG-CGC- -5'
12796 5' -58.6 NC_003387.1 + 45380 0.66 0.542798
Target:  5'- cGGUGCgguaCGGCCGCA--GCCGUUGCu -3'
miRNA:   3'- aCUACGg---GCUGGUGUgcCGGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 40996 0.66 0.542798
Target:  5'- aUGGUGCCUGAUCGgCgucgACGGCCGggucgacUGCGu -3'
miRNA:   3'- -ACUACGGGCUGGU-G----UGCCGGUa------GCGC- -5'
12796 5' -58.6 NC_003387.1 + 27465 0.66 0.539655
Target:  5'- cGAccUGCCCGACCaccucgauuacuucGCuuucgaGCGGCUGUgGCGc -3'
miRNA:   3'- aCU--ACGGGCUGG--------------UG------UGCCGGUAgCGC- -5'
12796 5' -58.6 NC_003387.1 + 8881 0.66 0.532346
Target:  5'- cUGGUGCaccgccCCGACCu--CGGCC-UCGCc -3'
miRNA:   3'- -ACUACG------GGCUGGuguGCCGGuAGCGc -5'
12796 5' -58.6 NC_003387.1 + 20759 0.66 0.532346
Target:  5'- gUGAcGaCCGACCuuGCGGCCGgggaUGCGa -3'
miRNA:   3'- -ACUaCgGGCUGGugUGCCGGUa---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.