miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 5' -53.9 NC_003387.1 + 43131 0.66 0.81267
Target:  5'- -aGCGCGAACGUgc-GCUCAaGGUCGg -3'
miRNA:   3'- gcUGUGCUUGCAgaaCGGGU-CCAGCg -5'
12798 5' -53.9 NC_003387.1 + 36534 0.66 0.81267
Target:  5'- cCGugAUGAuCGaCgagUGCUCGGuGUCGCg -3'
miRNA:   3'- -GCugUGCUuGCaGa--ACGGGUC-CAGCG- -5'
12798 5' -53.9 NC_003387.1 + 44929 0.66 0.81267
Target:  5'- gGGCugGGGCGacgaggcgcUCgcgaagGCUCAGGcCGCg -3'
miRNA:   3'- gCUGugCUUGC---------AGaa----CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 30011 0.66 0.803179
Target:  5'- cCGACugGu-CGguaucGCCCAGGcCGCc -3'
miRNA:   3'- -GCUGugCuuGCagaa-CGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 31182 0.66 0.803178
Target:  5'- aCGACGCGGGCGUCgccggUGCUgAuacucagCGCa -3'
miRNA:   3'- -GCUGUGCUUGCAGa----ACGGgUcca----GCG- -5'
12798 5' -53.9 NC_003387.1 + 2853 0.66 0.793508
Target:  5'- aCGACAUGAuCGUC--GgUgAGGUCGCc -3'
miRNA:   3'- -GCUGUGCUuGCAGaaCgGgUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 13693 0.66 0.792531
Target:  5'- uCGGCGuucguccCGAGCGcg--GCCCAGGcggCGCa -3'
miRNA:   3'- -GCUGU-------GCUUGCagaaCGGGUCCa--GCG- -5'
12798 5' -53.9 NC_003387.1 + 6695 0.66 0.787623
Target:  5'- aCGACGCucGGCGUCUUGCaCCgcGGGcaguucaccgucgacUCGCc -3'
miRNA:   3'- -GCUGUGc-UUGCAGAACG-GG--UCC---------------AGCG- -5'
12798 5' -53.9 NC_003387.1 + 7805 0.66 0.783668
Target:  5'- aGGC-CGAgcugcaACGcCUggcgGCCgAGGUCGCc -3'
miRNA:   3'- gCUGuGCU------UGCaGAa---CGGgUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 52669 0.66 0.783668
Target:  5'- cCGAU-CGAGCGcgUUUGUgCAGGUCaGCg -3'
miRNA:   3'- -GCUGuGCUUGCa-GAACGgGUCCAG-CG- -5'
12798 5' -53.9 NC_003387.1 + 46116 0.66 0.783668
Target:  5'- cCGGCgaACGAGuCGUCgcgGaacaCCGGGUUGCc -3'
miRNA:   3'- -GCUG--UGCUU-GCAGaa-Cg---GGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 39452 0.66 0.783668
Target:  5'- uCGACuugcccuUGGugGcCUUGCCCuuGGUgCGCa -3'
miRNA:   3'- -GCUGu------GCUugCaGAACGGGu-CCA-GCG- -5'
12798 5' -53.9 NC_003387.1 + 31234 0.66 0.783668
Target:  5'- gCGACACGAACcagCccgGCCCGaccGG-CGCg -3'
miRNA:   3'- -GCUGUGCUUGca-Gaa-CGGGU---CCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 33941 0.66 0.783668
Target:  5'- uCGGguCGAGCuucggcagCUUGCCgGGGUCGg -3'
miRNA:   3'- -GCUguGCUUGca------GAACGGgUCCAGCg -5'
12798 5' -53.9 NC_003387.1 + 51830 0.66 0.777688
Target:  5'- gCGaACACGAgcgcgccgagcagguACGUCUUGCC--GGUCuGCc -3'
miRNA:   3'- -GC-UGUGCU---------------UGCAGAACGGguCCAG-CG- -5'
12798 5' -53.9 NC_003387.1 + 47246 0.66 0.773671
Target:  5'- uCGGCcugugUGAAaGUCUUGCCCuGGUCa- -3'
miRNA:   3'- -GCUGu----GCUUgCAGAACGGGuCCAGcg -5'
12798 5' -53.9 NC_003387.1 + 46879 0.66 0.773671
Target:  5'- gCGGCGCccccaccuGCGgCgcaGCCCGGGUCGUc -3'
miRNA:   3'- -GCUGUGcu------UGCaGaa-CGGGUCCAGCG- -5'
12798 5' -53.9 NC_003387.1 + 24422 0.67 0.763527
Target:  5'- gCGAUAcCGAGgGg--UGCCCAGG-CGUg -3'
miRNA:   3'- -GCUGU-GCUUgCagaACGGGUCCaGCG- -5'
12798 5' -53.9 NC_003387.1 + 6585 0.67 0.753248
Target:  5'- gCGACGCGAACGgcaa-CCCGGuGUucCGCg -3'
miRNA:   3'- -GCUGUGCUUGCagaacGGGUC-CA--GCG- -5'
12798 5' -53.9 NC_003387.1 + 13445 0.67 0.742845
Target:  5'- cCGuCGuCGAGCaG-CUUGCCCAGcUCGCc -3'
miRNA:   3'- -GCuGU-GCUUG-CaGAACGGGUCcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.