miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 1423 0.66 0.513709
Target:  5'- gCGCCGCCGCCGacga-GCUGGcaggGCu -3'
miRNA:   3'- gGCGGUGGCGGUcaaugCGGCCa---CGc -5'
12800 5' -59.7 NC_003387.1 + 48731 0.66 0.513709
Target:  5'- gCCGCCACgGCCgccucaauccucGGgaACGUcacgcacgCGGUGCu -3'
miRNA:   3'- -GGCGGUGgCGG------------UCaaUGCG--------GCCACGc -5'
12800 5' -59.7 NC_003387.1 + 3898 0.66 0.513709
Target:  5'- gCCGCUgcccgacccugACCGCCugGGUgcuaACGCcCGGUGgGc -3'
miRNA:   3'- -GGCGG-----------UGGCGG--UCAa---UGCG-GCCACgC- -5'
12800 5' -59.7 NC_003387.1 + 9552 0.66 0.513709
Target:  5'- -aGCCGCCGCCGGgguggauuCGCCaGcacGCGc -3'
miRNA:   3'- ggCGGUGGCGGUCaau-----GCGGcCa--CGC- -5'
12800 5' -59.7 NC_003387.1 + 38872 0.66 0.512698
Target:  5'- cUCGCCgGCCGUUAGcuagacGCGCCgaaccguggagcgGGUGCGg -3'
miRNA:   3'- -GGCGG-UGGCGGUCaa----UGCGG-------------CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 27895 0.66 0.503637
Target:  5'- cCCgGCCAgCCGCCcgagUACGCCGaGcUGCu -3'
miRNA:   3'- -GG-CGGU-GGCGGuca-AUGCGGC-C-ACGc -5'
12800 5' -59.7 NC_003387.1 + 3298 0.66 0.503637
Target:  5'- aCgGCCGCCGaCuCGG--GCGCCgaGGUGCu -3'
miRNA:   3'- -GgCGGUGGC-G-GUCaaUGCGG--CCACGc -5'
12800 5' -59.7 NC_003387.1 + 37929 0.66 0.500632
Target:  5'- cUCGgCACCGCCGGgcACGCCaaguucgagacagcGGUcgaGCa -3'
miRNA:   3'- -GGCgGUGGCGGUCaaUGCGG--------------CCA---CGc -5'
12800 5' -59.7 NC_003387.1 + 34202 0.66 0.493652
Target:  5'- -aGCCACagCGCCAcGUcGCgGUCGGUGCc -3'
miRNA:   3'- ggCGGUG--GCGGU-CAaUG-CGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 42103 0.66 0.493652
Target:  5'- cUCGUacaACCGCaagGGUga-GCCGGUGCu -3'
miRNA:   3'- -GGCGg--UGGCGg--UCAaugCGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 2577 0.66 0.493652
Target:  5'- aCGCCGacCCGUCGGUcgACGCCuGGccGCa -3'
miRNA:   3'- gGCGGU--GGCGGUCAa-UGCGG-CCa-CGc -5'
12800 5' -59.7 NC_003387.1 + 34648 0.66 0.493652
Target:  5'- aCGUCaggaucggguGCCGCUGGgcaACGCCGGUGa- -3'
miRNA:   3'- gGCGG----------UGGCGGUCaa-UGCGGCCACgc -5'
12800 5' -59.7 NC_003387.1 + 51296 0.66 0.493652
Target:  5'- -aGCC-CUGCCAGcu-CGUCGGcgGCGg -3'
miRNA:   3'- ggCGGuGGCGGUCaauGCGGCCa-CGC- -5'
12800 5' -59.7 NC_003387.1 + 23935 0.66 0.489683
Target:  5'- aCGCCGCggugUGCCAGUcccaugcUgcagcacgugcgcaGCGCCGG-GCGg -3'
miRNA:   3'- gGCGGUG----GCGGUCA-------A--------------UGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 2192 0.66 0.487705
Target:  5'- -aGCCACCGCgGgcucaggggugccucGUgcuCGCCGGUcagGCGg -3'
miRNA:   3'- ggCGGUGGCGgU---------------CAau-GCGGCCA---CGC- -5'
12800 5' -59.7 NC_003387.1 + 23428 0.66 0.483759
Target:  5'- cCCGCgGUCGCCGGggaacaggGCGUCGaUGCGg -3'
miRNA:   3'- -GGCGgUGGCGGUCaa------UGCGGCcACGC- -5'
12800 5' -59.7 NC_003387.1 + 18968 0.66 0.483759
Target:  5'- gCGgCGCCGCC-GUUGCccuuGCCGGgGUGc -3'
miRNA:   3'- gGCgGUGGCGGuCAAUG----CGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 9909 0.66 0.483759
Target:  5'- cUCGCCGCCGUCGGg---GCuCGGcUGCc -3'
miRNA:   3'- -GGCGGUGGCGGUCaaugCG-GCC-ACGc -5'
12800 5' -59.7 NC_003387.1 + 10456 0.66 0.483759
Target:  5'- -aGCgCGCUGUCGGU--CGCCGGUGgCa -3'
miRNA:   3'- ggCG-GUGGCGGUCAauGCGGCCAC-Gc -5'
12800 5' -59.7 NC_003387.1 + 50227 0.66 0.482774
Target:  5'- gCGUCACCGUCAcauacgaggcgccGUacgucaGCGCCGG-GCGg -3'
miRNA:   3'- gGCGGUGGCGGU-------------CAa-----UGCGGCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.