miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 34390 0.66 0.677451
Target:  5'- gACCgGCGGGCACGAcggccacgccguUGcCGGGCGCc-- -3'
miRNA:   3'- gUGG-CGUUCGUGUU------------AC-GUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 21577 0.66 0.677451
Target:  5'- gGCC-CAGGCGCGcgGCAucaGCGAGg -3'
miRNA:   3'- gUGGcGUUCGUGUuaCGUccgCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 8358 0.66 0.677451
Target:  5'- uGCCGCuguucGGCA---UGCAGGcCGCGGu -3'
miRNA:   3'- gUGGCGu----UCGUguuACGUCC-GCGCUc -5'
12802 5' -55.6 NC_003387.1 + 35272 0.66 0.677451
Target:  5'- gCGCCGCGGGUACGA--CuGGCGCc-- -3'
miRNA:   3'- -GUGGCGUUCGUGUUacGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 2955 0.66 0.677451
Target:  5'- cCACCGCAGguaacGCGCAuggGCcucgcucgGGGCcucGCGAGg -3'
miRNA:   3'- -GUGGCGUU-----CGUGUua-CG--------UCCG---CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 77 0.66 0.677451
Target:  5'- gCGCCGCGGGCGuu-UGCuGGCuCGAc -3'
miRNA:   3'- -GUGGCGUUCGUguuACGuCCGcGCUc -5'
12802 5' -55.6 NC_003387.1 + 1280 0.66 0.676343
Target:  5'- gGCUGCGcggcguucgaccGGCGCAGUucgaggcggcgccGCAGGCGCu-- -3'
miRNA:   3'- gUGGCGU------------UCGUGUUA-------------CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 33546 0.66 0.666357
Target:  5'- uGCCGUuAGCgACcGUGCGGGcCGCGc- -3'
miRNA:   3'- gUGGCGuUCG-UGuUACGUCC-GCGCuc -5'
12802 5' -55.6 NC_003387.1 + 13158 0.66 0.666357
Target:  5'- gCACCGCGuGCAgAagGCcGaGCGCGAc -3'
miRNA:   3'- -GUGGCGUuCGUgUuaCGuC-CGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 41226 0.66 0.666357
Target:  5'- gCACgGCAAcucCGCGGUGCAuGGCgGCGAc -3'
miRNA:   3'- -GUGgCGUUc--GUGUUACGU-CCG-CGCUc -5'
12802 5' -55.6 NC_003387.1 + 19888 0.66 0.666357
Target:  5'- aACCGCcccGCcccGCGGUGCGGGCuGCGc- -3'
miRNA:   3'- gUGGCGuu-CG---UGUUACGUCCG-CGCuc -5'
12802 5' -55.6 NC_003387.1 + 49057 0.66 0.666357
Target:  5'- gCGCUGCuGGCGCucaccggGCAGGCucGCGGc -3'
miRNA:   3'- -GUGGCGuUCGUGuua----CGUCCG--CGCUc -5'
12802 5' -55.6 NC_003387.1 + 36965 0.66 0.664134
Target:  5'- aACCGCAGGCuguACGccccgaucAUGCugcggcugauccGGCGCGGGu -3'
miRNA:   3'- gUGGCGUUCG---UGU--------UACGu-----------CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 34693 0.66 0.663022
Target:  5'- aCGCCGCcucGGGCACGcuguacagccgcggGUGCuuGuGCGCGAa -3'
miRNA:   3'- -GUGGCG---UUCGUGU--------------UACGu-C-CGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 17123 0.66 0.659684
Target:  5'- gGCCGUAGGCGaucgcuGUGUcgaccagcucggccaGGGCGcCGAGg -3'
miRNA:   3'- gUGGCGUUCGUgu----UACG---------------UCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 46608 0.66 0.655231
Target:  5'- aGCCGCugccGCGCAugucGCAGGUGUucGAGc -3'
miRNA:   3'- gUGGCGuu--CGUGUua--CGUCCGCG--CUC- -5'
12802 5' -55.6 NC_003387.1 + 10114 0.66 0.655231
Target:  5'- uGCgCGCuGAGCGCGAaaaGCGuuGGCGCGAa -3'
miRNA:   3'- gUG-GCG-UUCGUGUUa--CGU--CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 40708 0.66 0.655231
Target:  5'- aCACCGCAuGCGCcGUGUcgaccAGGcCGCGc- -3'
miRNA:   3'- -GUGGCGUuCGUGuUACG-----UCC-GCGCuc -5'
12802 5' -55.6 NC_003387.1 + 25693 0.66 0.655231
Target:  5'- cCGCCGCcucGCGaacaccCAAUGCAGcaaCGCGAGa -3'
miRNA:   3'- -GUGGCGuu-CGU------GUUACGUCc--GCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35301 0.66 0.653002
Target:  5'- uCGCCGCAcugaaucGGCaccugugGCAGUGguGG-GCGGGc -3'
miRNA:   3'- -GUGGCGU-------UCG-------UGUUACguCCgCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.