miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 26186 0.66 0.610254
Target:  5'- gUCGCGUgCUUGCCUgacggcucgucgucGUCGGccucgcacuccUCGGGCa -3'
miRNA:   3'- -GGUGCG-GAACGGGaa------------CAGCC-----------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 13076 0.66 0.609183
Target:  5'- cCCACGCCaUGCgCgacaccgGGUCGaGGCu -3'
miRNA:   3'- -GGUGCGGaACGgGaacag--CCAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 12271 0.66 0.609183
Target:  5'- cCCGCGCCUgGCgaCCggcgGcCGGaucagCGGGCc -3'
miRNA:   3'- -GGUGCGGAaCG--GGaa--CaGCCa----GCCCG- -5'
12805 5' -58 NC_003387.1 + 694 0.66 0.605971
Target:  5'- aCGCaggGCCUUGaucgCCUcGUCgucgagggccgacaGGUCGGGCa -3'
miRNA:   3'- gGUG---CGGAACg---GGAaCAG--------------CCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 1577 0.66 0.598485
Target:  5'- -aGCGCCUaacGCCCUgg-CGGUCGacaugucgcacGGCc -3'
miRNA:   3'- ggUGCGGAa--CGGGAacaGCCAGC-----------CCG- -5'
12805 5' -58 NC_003387.1 + 22959 0.66 0.598485
Target:  5'- aCCGCGUggggcGCCCcgGUCaucguGUCGGGCg -3'
miRNA:   3'- -GGUGCGgaa--CGGGaaCAGc----CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 27820 0.66 0.598485
Target:  5'- -aACGCaCUUGCCggugccGUCGGUggacaGGGCg -3'
miRNA:   3'- ggUGCG-GAACGGgaa---CAGCCAg----CCCG- -5'
12805 5' -58 NC_003387.1 + 38891 0.66 0.598485
Target:  5'- aCGCGCCgaa-CCgUGgagCGGgugCGGGCg -3'
miRNA:   3'- gGUGCGGaacgGGaACa--GCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 30182 0.66 0.592078
Target:  5'- aCCGCGUCgagccaGCCCUcggccugggccaggGUCGcGgCGGGCa -3'
miRNA:   3'- -GGUGCGGaa----CGGGAa-------------CAGC-CaGCCCG- -5'
12805 5' -58 NC_003387.1 + 945 0.66 0.587814
Target:  5'- uCgACGCCcaGCCaccaGUCGGgCGGGUa -3'
miRNA:   3'- -GgUGCGGaaCGGgaa-CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 18021 0.66 0.585683
Target:  5'- gUCGCGCCgcauguaccagGCCCacggcgUGUUuuucGUCGGGCu -3'
miRNA:   3'- -GGUGCGGaa---------CGGGa-----ACAGc---CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 39154 0.66 0.577178
Target:  5'- uCCGCGCCgaggGCg--UGUacUGGUCGGuGCg -3'
miRNA:   3'- -GGUGCGGaa--CGggaACA--GCCAGCC-CG- -5'
12805 5' -58 NC_003387.1 + 23414 0.66 0.566585
Target:  5'- gCCugGCgCUcgUGCCCg---CGGUCgccggggaacaGGGCg -3'
miRNA:   3'- -GGugCG-GA--ACGGGaacaGCCAG-----------CCCG- -5'
12805 5' -58 NC_003387.1 + 42427 0.66 0.566585
Target:  5'- uCCugGCCUgcgcgcugagcGCCCgaggUGUCGaacuUCGGGg -3'
miRNA:   3'- -GGugCGGAa----------CGGGa---ACAGCc---AGCCCg -5'
12805 5' -58 NC_003387.1 + 35792 0.66 0.566585
Target:  5'- aCCgaACGUCguagcggcGCCCcaugUUGUCGGcCGGGUa -3'
miRNA:   3'- -GG--UGCGGaa------CGGG----AACAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 43235 0.66 0.556044
Target:  5'- aCCACGUgUUGCCgUuccUGuUCGGcgcCGGGUc -3'
miRNA:   3'- -GGUGCGgAACGGgA---AC-AGCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 11590 0.66 0.556044
Target:  5'- aCgGCGUCgcgaugGCCg-UGU-GGUCGGGCa -3'
miRNA:   3'- -GgUGCGGaa----CGGgaACAgCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 44427 0.66 0.556043
Target:  5'- gCCGCGCCggUGaUCCacacGUCGcccUCGGGCg -3'
miRNA:   3'- -GGUGCGGa-AC-GGGaa--CAGCc--AGCCCG- -5'
12805 5' -58 NC_003387.1 + 35164 0.66 0.556043
Target:  5'- -gGCGUUgucGCCCUUGUCacccuUCGGGCc -3'
miRNA:   3'- ggUGCGGaa-CGGGAACAGcc---AGCCCG- -5'
12805 5' -58 NC_003387.1 + 1596 0.66 0.556043
Target:  5'- aCGCGCCcUGgCa-UGuUCGGcCGGGCg -3'
miRNA:   3'- gGUGCGGaACgGgaAC-AGCCaGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.