miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12806 3' -59 NC_003387.1 + 11556 0.66 0.558106
Target:  5'- gUGCUgacugCGGUGgcgaucggcaccaagGCGUACGGCGU-CGCGa -3'
miRNA:   3'- -ACGG-----GCCAC---------------UGCAUGCCGCAgGUGCg -5'
12806 3' -59 NC_003387.1 + 30878 0.66 0.553929
Target:  5'- -aCCUGGUG-CGc-CGGUGUCCacACGCu -3'
miRNA:   3'- acGGGCCACuGCauGCCGCAGG--UGCG- -5'
12806 3' -59 NC_003387.1 + 46901 0.66 0.553929
Target:  5'- aGCCCGGgucGuCGUgcACGGCcg-CACGCu -3'
miRNA:   3'- aCGGGCCa--CuGCA--UGCCGcagGUGCG- -5'
12806 3' -59 NC_003387.1 + 18321 0.66 0.550802
Target:  5'- cGCCCGGcaacGGCGUGgccgucgugcccgcCGGUcaGaCCGCGCa -3'
miRNA:   3'- aCGGGCCa---CUGCAU--------------GCCG--CaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 44871 0.66 0.543528
Target:  5'- aGCCguCGGgGGCGU-CGGCGauUCCgccuGCGCg -3'
miRNA:   3'- aCGG--GCCaCUGCAuGCCGC--AGG----UGCG- -5'
12806 3' -59 NC_003387.1 + 35690 0.66 0.543528
Target:  5'- cGCCCGGcGAgG-GCGGCagccgCCGCGg -3'
miRNA:   3'- aCGGGCCaCUgCaUGCCGca---GGUGCg -5'
12806 3' -59 NC_003387.1 + 10678 0.66 0.543528
Target:  5'- cGCCgCGGUcGAUcu-UGGCGcCCugGCg -3'
miRNA:   3'- aCGG-GCCA-CUGcauGCCGCaGGugCG- -5'
12806 3' -59 NC_003387.1 + 42608 0.66 0.533193
Target:  5'- cGCCCGGUGACccuCG-CccCCAUGCa -3'
miRNA:   3'- aCGGGCCACUGcauGCcGcaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 41191 0.66 0.533193
Target:  5'- gGCCUGGUGcGCGaACagGGCGa-CACGCa -3'
miRNA:   3'- aCGGGCCAC-UGCaUG--CCGCagGUGCG- -5'
12806 3' -59 NC_003387.1 + 26202 0.66 0.533193
Target:  5'- cGCUCGcGcgacGACGUGCGGCGcuucaUUCACaGCg -3'
miRNA:   3'- aCGGGC-Ca---CUGCAUGCCGC-----AGGUG-CG- -5'
12806 3' -59 NC_003387.1 + 12250 0.66 0.533193
Target:  5'- cGCUCGGcuUGAUGUACuuGGCGcuguacagcuUCgGCGCu -3'
miRNA:   3'- aCGGGCC--ACUGCAUG--CCGC----------AGgUGCG- -5'
12806 3' -59 NC_003387.1 + 2021 0.66 0.533193
Target:  5'- cUGCUCGGUGcCGccgACGGCcG-CCGuCGCc -3'
miRNA:   3'- -ACGGGCCACuGCa--UGCCG-CaGGU-GCG- -5'
12806 3' -59 NC_003387.1 + 47595 0.66 0.522928
Target:  5'- cGCCCcucGUcGCGUGCGGCGaUCagcuCGCu -3'
miRNA:   3'- aCGGGc--CAcUGCAUGCCGC-AGgu--GCG- -5'
12806 3' -59 NC_003387.1 + 43742 0.66 0.51274
Target:  5'- aGCCCGcgaGCGUguugGCGGCuaCCGCGCa -3'
miRNA:   3'- aCGGGCcacUGCA----UGCCGcaGGUGCG- -5'
12806 3' -59 NC_003387.1 + 21685 0.66 0.51274
Target:  5'- gGCgCCGGUGcCGUGCuGGCcgccgCCccgGCGCa -3'
miRNA:   3'- aCG-GGCCACuGCAUG-CCGca---GG---UGCG- -5'
12806 3' -59 NC_003387.1 + 7444 0.66 0.506667
Target:  5'- aUGCCCGcccGACGggguCGGCGUggcgauccauuccagCCGCGUc -3'
miRNA:   3'- -ACGGGCca-CUGCau--GCCGCA---------------GGUGCG- -5'
12806 3' -59 NC_003387.1 + 42023 0.66 0.502635
Target:  5'- cGCCCGGcuUGAUac-CGGCGgCCAcCGCc -3'
miRNA:   3'- aCGGGCC--ACUGcauGCCGCaGGU-GCG- -5'
12806 3' -59 NC_003387.1 + 39912 0.66 0.502635
Target:  5'- cUGcCCCGG-GACGacUGCGGuCGUUgcgaggCGCGCa -3'
miRNA:   3'- -AC-GGGCCaCUGC--AUGCC-GCAG------GUGCG- -5'
12806 3' -59 NC_003387.1 + 22069 0.66 0.502635
Target:  5'- gGCaCCGuUGGCG-ACGGCGguaGCGCg -3'
miRNA:   3'- aCG-GGCcACUGCaUGCCGCaggUGCG- -5'
12806 3' -59 NC_003387.1 + 28540 0.66 0.502635
Target:  5'- aGCCCGGcGACaaUugGGCGaCCGagGCg -3'
miRNA:   3'- aCGGGCCaCUGc-AugCCGCaGGUg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.