miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 46040 0.66 0.540698
Target:  5'- cCGCGagcugucggcaaucaCCUCGAUcgccGCGUCGGCGucCCa -3'
miRNA:   3'- -GCGCg--------------GGAGCUGu---CGCAGCUGCucGG- -5'
12810 5' -59.5 NC_003387.1 + 46063 0.66 0.53967
Target:  5'- aGCGCaCCgCGcuugAGCGggucgaCGACGAGCCc -3'
miRNA:   3'- gCGCG-GGaGCug--UCGCa-----GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 41685 0.66 0.53967
Target:  5'- gGCGUCaaccCGACccGGCGUCG-CGGcGCCg -3'
miRNA:   3'- gCGCGGga--GCUG--UCGCAGCuGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 13886 0.66 0.53967
Target:  5'- -aUGCCUugagcugCGGCGGC-UCGuCGAGCCa -3'
miRNA:   3'- gcGCGGGa------GCUGUCGcAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 21751 0.66 0.53967
Target:  5'- gGCGCUCggCGuCAGCGccacCGACGcGCUg -3'
miRNA:   3'- gCGCGGGa-GCuGUCGCa---GCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 35581 0.66 0.530445
Target:  5'- gGCGCCCUgGccgagcuggucgacACAGCGaucgccuacggcccCGAgGAGCCc -3'
miRNA:   3'- gCGCGGGAgC--------------UGUCGCa-------------GCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 29490 0.66 0.529423
Target:  5'- aCG-GCCCgCGAgaugGGCGUCGACcGGCUg -3'
miRNA:   3'- -GCgCGGGaGCUg---UCGCAGCUGcUCGG- -5'
12810 5' -59.5 NC_003387.1 + 13830 0.66 0.529423
Target:  5'- cCGCaCCCgcuccacgguUCGGC-GCGUcuagcuaacggcCGGCGAGCCg -3'
miRNA:   3'- -GCGcGGG----------AGCUGuCGCA------------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 21644 0.66 0.529423
Target:  5'- aGCGUCagcucgUCGACcGCGgCGGCG-GCCg -3'
miRNA:   3'- gCGCGGg-----AGCUGuCGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 29878 0.66 0.529423
Target:  5'- uGCGCCUUgcgcgcCGAUcGCGUUGGCGAucGCg -3'
miRNA:   3'- gCGCGGGA------GCUGuCGCAGCUGCU--CGg -5'
12810 5' -59.5 NC_003387.1 + 1577 0.66 0.528402
Target:  5'- aGCGCCUaacgcccuggcggUCGACA-UGUCGcACG-GCCu -3'
miRNA:   3'- gCGCGGG-------------AGCUGUcGCAGC-UGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 51488 0.66 0.528402
Target:  5'- -aCGCCagacCGggcaggaGCAGC-UCGACGAGCCa -3'
miRNA:   3'- gcGCGGga--GC-------UGUCGcAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 11297 0.66 0.519249
Target:  5'- uGCGaCCggcggCGACAGCGgcaagcUCGGCGAGa- -3'
miRNA:   3'- gCGCgGGa----GCUGUCGC------AGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 20984 0.66 0.519249
Target:  5'- cCGCGaaugCCgCGAUAGCucucGUCGGCGAcagcGCCg -3'
miRNA:   3'- -GCGCg---GGaGCUGUCG----CAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 44363 0.66 0.519249
Target:  5'- gGUGCCCaUGACaaccgacgacccGGUgGUCGACGAGgCg -3'
miRNA:   3'- gCGCGGGaGCUG------------UCG-CAGCUGCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 279 0.66 0.519249
Target:  5'- cCGCGCCggUCGAguGCacgaucaCGAcCGAGCCg -3'
miRNA:   3'- -GCGCGGg-AGCUguCGca-----GCU-GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 25571 0.66 0.519249
Target:  5'- aCGUuCCC-CGGCGGCGccgacccCGGCGGGCa -3'
miRNA:   3'- -GCGcGGGaGCUGUCGCa------GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 32534 0.66 0.519249
Target:  5'- uGCGUaguUCaCGGCGGCGccguccggUGGCGAGCCg -3'
miRNA:   3'- gCGCG---GGaGCUGUCGCa-------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 48046 0.66 0.519249
Target:  5'- --aGCaCCUCGucuugcuugGCGGCGUCGGCcgcuuggcgccGGGCCu -3'
miRNA:   3'- gcgCG-GGAGC---------UGUCGCAGCUG-----------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 23247 0.66 0.519249
Target:  5'- gGCGCCCUCGGgcacUGGCucuaUGACGuGCUg -3'
miRNA:   3'- gCGCGGGAGCU----GUCGca--GCUGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.