miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12817 5' -63.6 NC_003387.1 + 7942 0.66 0.315904
Target:  5'- cGCGGGCcagcuugucgaGGUC-GGGCCGCUucacGGcgGGCg -3'
miRNA:   3'- -CGCCCG-----------CCGGuCCCGGCGGu---UCa-CUG- -5'
12817 5' -63.6 NC_003387.1 + 40363 0.66 0.315904
Target:  5'- cGUGaucGCGGCCGGGGCCaaggGCCuc--GACg -3'
miRNA:   3'- -CGCc--CGCCGGUCCCGG----CGGuucaCUG- -5'
12817 5' -63.6 NC_003387.1 + 10774 0.66 0.315904
Target:  5'- cGCuGGCGGCCugcaucgucGGGUCGUCGGcGUcGGCg -3'
miRNA:   3'- -CGcCCGCCGGu--------CCCGGCGGUU-CA-CUG- -5'
12817 5' -63.6 NC_003387.1 + 28594 0.66 0.315904
Target:  5'- uCGGGCaGGCCGGGauaGCUGCCGAc---- -3'
miRNA:   3'- cGCCCG-CCGGUCC---CGGCGGUUcacug -5'
12817 5' -63.6 NC_003387.1 + 18500 0.66 0.308549
Target:  5'- -aGGGCcugcagcauGCUcucGGGCCGCCGcGGUGGCa -3'
miRNA:   3'- cgCCCGc--------CGGu--CCCGGCGGU-UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 12895 0.66 0.308549
Target:  5'- cGUGaGCGGCCucgacggcguGGGGgUGCCuaguGGUGGCu -3'
miRNA:   3'- -CGCcCGCCGG----------UCCCgGCGGu---UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 45682 0.66 0.308549
Target:  5'- gGCGaGCGGCC-GGGCCuGCCGu-UGAa -3'
miRNA:   3'- -CGCcCGCCGGuCCCGG-CGGUucACUg -5'
12817 5' -63.6 NC_003387.1 + 31275 0.66 0.303478
Target:  5'- aGCGGGgccggguuaguugacCaGCCGuagcugcugcgccGGGCCGCCGGG-GGCg -3'
miRNA:   3'- -CGCCC---------------GcCGGU-------------CCCGGCGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 42588 0.66 0.301325
Target:  5'- uGUGGGagaaGGCCgAGccCCGCCcGGUGACc -3'
miRNA:   3'- -CGCCCg---CCGG-UCccGGCGGuUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 19245 0.66 0.299896
Target:  5'- cGCGGGCGccgaccGCCucggcgacuucGGCCGCCuugcgcgagguGGUGGCg -3'
miRNA:   3'- -CGCCCGC------CGGuc---------CCGGCGGu----------UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 52541 0.66 0.294232
Target:  5'- aGCuGGCGGCCGGGcGUCaCUuucGUGACc -3'
miRNA:   3'- -CGcCCGCCGGUCC-CGGcGGuu-CACUG- -5'
12817 5' -63.6 NC_003387.1 + 7983 0.66 0.294232
Target:  5'- cGCGcGGa-GCaGGGGCCGCaacAGUGACu -3'
miRNA:   3'- -CGC-CCgcCGgUCCCGGCGgu-UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 18234 0.66 0.294232
Target:  5'- gGCGGGCguacucguaGGCCGcauccGCCGCCAuGUcGACg -3'
miRNA:   3'- -CGCCCG---------CCGGUcc---CGGCGGUuCA-CUG- -5'
12817 5' -63.6 NC_003387.1 + 27540 0.66 0.294232
Target:  5'- cGCGgcGGCGgcGCCGGGGCCaccgcGCCGAGccGAa -3'
miRNA:   3'- -CGC--CCGC--CGGUCCCGG-----CGGUUCa-CUg -5'
12817 5' -63.6 NC_003387.1 + 28927 0.66 0.28727
Target:  5'- uGCGcGGCGGCgAGGuucaCGCCuGAGUGuCg -3'
miRNA:   3'- -CGC-CCGCCGgUCCcg--GCGG-UUCACuG- -5'
12817 5' -63.6 NC_003387.1 + 5816 0.66 0.285207
Target:  5'- aGCGuGCGGCCGugcacgacgaccucGGGCUGCgccgCAGGUGGg -3'
miRNA:   3'- -CGCcCGCCGGU--------------CCCGGCG----GUUCACUg -5'
12817 5' -63.6 NC_003387.1 + 31024 0.66 0.280438
Target:  5'- cGCGGGCcgcgcucGCCGaGGCgGCCAGGgcgucGGCg -3'
miRNA:   3'- -CGCCCGc------CGGUcCCGgCGGUUCa----CUG- -5'
12817 5' -63.6 NC_003387.1 + 35686 0.66 0.280438
Target:  5'- aGCGGGCacguGUgGGGGCCGUacGGcGACg -3'
miRNA:   3'- -CGCCCGc---CGgUCCCGGCGguUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 15264 0.66 0.280438
Target:  5'- --uGGCGGCgCAGcGCCGCCAGcaUGGCa -3'
miRNA:   3'- cgcCCGCCG-GUCcCGGCGGUUc-ACUG- -5'
12817 5' -63.6 NC_003387.1 + 44400 0.66 0.273736
Target:  5'- uCGaGGuCGGCC-GGGCCGU--AGUGAUg -3'
miRNA:   3'- cGC-CC-GCCGGuCCCGGCGguUCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.