miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12830 3' -60.6 NC_003387.1 + 19515 0.66 0.441055
Target:  5'- cCGaGCGGGCcucgcgcuUGcgCUGCGCGaUCCGCa- -3'
miRNA:   3'- -GC-CGUCCG--------ACuaGACGUGC-GGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 15395 0.66 0.441055
Target:  5'- gCGGCggGGGCUcGUCcacgGCACGUCgGCGc -3'
miRNA:   3'- -GCCG--UCCGAcUAGa---CGUGCGGgCGCu -5'
12830 3' -60.6 NC_003387.1 + 9670 0.66 0.441055
Target:  5'- gGGCGGuGCggGGUCaGCuCGCCCGUc- -3'
miRNA:   3'- gCCGUC-CGa-CUAGaCGuGCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 50941 0.66 0.441055
Target:  5'- -cGCAaaGCUGAUCUGaACGCCagCGCGAa -3'
miRNA:   3'- gcCGUc-CGACUAGACgUGCGG--GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 4072 0.66 0.422363
Target:  5'- aCGGCGuGCgGGuUCUgccGCAUGCUCGCGAc -3'
miRNA:   3'- -GCCGUcCGaCU-AGA---CGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 42198 0.66 0.421441
Target:  5'- aGGCGGGCgUGcgCgaGCaggacggcgaccgGCGCaCCGCGAu -3'
miRNA:   3'- gCCGUCCG-ACuaGa-CG-------------UGCG-GGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 50163 0.66 0.413197
Target:  5'- uCGGCGuacacGGCgagGAUCUGCcgcgGCGaCCGCGu -3'
miRNA:   3'- -GCCGU-----CCGa--CUAGACG----UGCgGGCGCu -5'
12830 3' -60.6 NC_003387.1 + 38911 0.66 0.407756
Target:  5'- gGuGCGGGCguuugcucgcugugGAUCUGCgaGCGCagCGCGAc -3'
miRNA:   3'- gC-CGUCCGa-------------CUAGACG--UGCGg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 9820 0.66 0.404155
Target:  5'- -uGCAGGCUGcgCauuuugUGCugGCCCcCGGc -3'
miRNA:   3'- gcCGUCCGACuaG------ACGugCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 30693 0.66 0.404155
Target:  5'- cCGGCggGGGCguuuUC-GUGCGCCUGCGGg -3'
miRNA:   3'- -GCCG--UCCGacu-AGaCGUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 48717 0.66 0.395239
Target:  5'- gGGCcuGGCUGAUCgccGcCACGgCCGCc- -3'
miRNA:   3'- gCCGu-CCGACUAGa--C-GUGCgGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 52197 0.66 0.38645
Target:  5'- gGGCAGGUgucucggGAUCUucaaccgcGguCGCCaCGCGGg -3'
miRNA:   3'- gCCGUCCGa------CUAGA--------CguGCGG-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 3950 0.67 0.369265
Target:  5'- gCGGCGaGCUGG-CUGCGCcgaGCaCCGCGu -3'
miRNA:   3'- -GCCGUcCGACUaGACGUG---CG-GGCGCu -5'
12830 3' -60.6 NC_003387.1 + 4891 0.67 0.360872
Target:  5'- uCGaCAGGCUGAUCUGC-CGggUGCGGu -3'
miRNA:   3'- -GCcGUCCGACUAGACGuGCggGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 20178 0.67 0.352611
Target:  5'- gGGCGcGGUUGAUgcgCUGCuGCGCCuCGCa- -3'
miRNA:   3'- gCCGU-CCGACUA---GACG-UGCGG-GCGcu -5'
12830 3' -60.6 NC_003387.1 + 45951 0.67 0.352611
Target:  5'- uCGGcCAGGUUGAUCUGguucuCGCCgGUGc -3'
miRNA:   3'- -GCC-GUCCGACUAGACgu---GCGGgCGCu -5'
12830 3' -60.6 NC_003387.1 + 33468 0.67 0.336496
Target:  5'- gCGGCcgaagucgccgAGGC-GGUCg--GCGCCCGCGAu -3'
miRNA:   3'- -GCCG-----------UCCGaCUAGacgUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 7800 0.67 0.336496
Target:  5'- gGuGCAGGCcGAgCUGCaACGCCUgGCGGc -3'
miRNA:   3'- gC-CGUCCGaCUaGACG-UGCGGG-CGCU- -5'
12830 3' -60.6 NC_003387.1 + 19637 0.68 0.328642
Target:  5'- aCGGCGGGCgacgCgGuUACGCUCGCGGc -3'
miRNA:   3'- -GCCGUCCGacuaGaC-GUGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 48409 0.68 0.326312
Target:  5'- uCGGCguugagccacugccGGGUcgcggUGcgCUGCuCGCCCGCGGc -3'
miRNA:   3'- -GCCG--------------UCCG-----ACuaGACGuGCGGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.