miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 41866 0.66 0.854744
Target:  5'- gAAGAUCGGCaGACCGCGGuCGGcgaGCu -3'
miRNA:   3'- -UUCUAGUUG-CUGGCGCUcGUCaugUG- -5'
12835 5' -52.1 NC_003387.1 + 14247 0.66 0.854744
Target:  5'- cGGGAUCGGgcCGACUGguaaagaaCGGGCAGaACACg -3'
miRNA:   3'- -UUCUAGUU--GCUGGC--------GCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 3974 0.66 0.852118
Target:  5'- cAAGGcUCGGCGAcCCGCGGgucauggacucgucGCGGcGCACg -3'
miRNA:   3'- -UUCU-AGUUGCU-GGCGCU--------------CGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 49650 0.66 0.845904
Target:  5'- aAGGAUCAGguuguacggcuCGACCgagGCGGGCGGgaACGCc -3'
miRNA:   3'- -UUCUAGUU-----------GCUGG---CGCUCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 12808 0.66 0.827505
Target:  5'- ----gCAACGACCGCagucgucgccgGGGCAGUuguggugagGCACg -3'
miRNA:   3'- uucuaGUUGCUGGCG-----------CUCGUCA---------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 27931 0.66 0.827505
Target:  5'- cAGGUCGgccGCGACC-CGAGCGGUuccgGCu -3'
miRNA:   3'- uUCUAGU---UGCUGGcGCUCGUCAug--UG- -5'
12835 5' -52.1 NC_003387.1 + 43717 0.66 0.824667
Target:  5'- cAGGugcUCGACGGcggcaugcgggagcCCGCGAGCGuGUugGCg -3'
miRNA:   3'- uUCU---AGUUGCU--------------GGCGCUCGU-CAugUG- -5'
12835 5' -52.1 NC_003387.1 + 50982 0.66 0.817968
Target:  5'- -cGA-UAGCGGCCGgGGGCGuuuucguuugcuGUGCACg -3'
miRNA:   3'- uuCUaGUUGCUGGCgCUCGU------------CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 31432 0.66 0.817002
Target:  5'- ---cUCGACGGCCuCGAcgacgacGCGGUGCGCc -3'
miRNA:   3'- uucuAGUUGCUGGcGCU-------CGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 13464 0.66 0.808219
Target:  5'- cAAGggCcGCGACgGCGAGgAGgGCACc -3'
miRNA:   3'- -UUCuaGuUGCUGgCGCUCgUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 39119 0.66 0.808219
Target:  5'- cGAGGUgcACGACCGU-AGCGGUcaaaaGCACa -3'
miRNA:   3'- -UUCUAguUGCUGGCGcUCGUCA-----UGUG- -5'
12835 5' -52.1 NC_003387.1 + 22474 0.66 0.808219
Target:  5'- ---cUCGACGACCGCG-GCGucGUAC-Cg -3'
miRNA:   3'- uucuAGUUGCUGGCGCuCGU--CAUGuG- -5'
12835 5' -52.1 NC_003387.1 + 49376 0.66 0.808219
Target:  5'- --cGUCGACGACCGCGccaaacgagcgGGCcucGGUGuCACg -3'
miRNA:   3'- uucUAGUUGCUGGCGC-----------UCG---UCAU-GUG- -5'
12835 5' -52.1 NC_003387.1 + 20080 0.66 0.807233
Target:  5'- cAAGGUgAACGACgGCGAccgcucugugaucGCcaGGUACACc -3'
miRNA:   3'- -UUCUAgUUGCUGgCGCU-------------CG--UCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 51505 0.67 0.798271
Target:  5'- cAGGAUCAGCGgguuaggcGCCGCGuucgucGCGG-GCACc -3'
miRNA:   3'- -UUCUAGUUGC--------UGGCGCu-----CGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 1702 0.67 0.788136
Target:  5'- -cGGUCGACugGAUCGCuGAGCGGgccgggcgGCGCa -3'
miRNA:   3'- uuCUAGUUG--CUGGCG-CUCGUCa-------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 47010 0.67 0.788136
Target:  5'- -cGGUCAGCGACgaCGCGGGC---ACGCc -3'
miRNA:   3'- uuCUAGUUGCUG--GCGCUCGucaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 29987 0.67 0.788136
Target:  5'- cAAGGcgAGCGACCGCGAGU---ACGCc -3'
miRNA:   3'- -UUCUagUUGCUGGCGCUCGucaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 4615 0.67 0.777825
Target:  5'- -uGAUCGGCGAgccaCCGCGGGCGcaGCGg -3'
miRNA:   3'- uuCUAGUUGCU----GGCGCUCGUcaUGUg -5'
12835 5' -52.1 NC_003387.1 + 52594 0.67 0.76735
Target:  5'- cGGAUCGcgaggGCGACCGCaucgaGGCGG-GCGCg -3'
miRNA:   3'- uUCUAGU-----UGCUGGCGc----UCGUCaUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.