miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 5' -59.8 NC_003387.1 + 15927 0.66 0.534021
Target:  5'- aGCaCGUCGCGgu-GGCGUGCgCGUCgGc -3'
miRNA:   3'- -CGcGCAGCGCaagCUGCACG-GCGGgC- -5'
12836 5' -59.8 NC_003387.1 + 17332 0.66 0.534021
Target:  5'- uGCG-GUgGCGcUUCuGCGUGCCGCaaGg -3'
miRNA:   3'- -CGCgCAgCGC-AAGcUGCACGGCGggC- -5'
12836 5' -59.8 NC_003387.1 + 13675 0.66 0.534021
Target:  5'- gGCGcCGUCGaCGcuaugUCGGCGUucgucccgagcGCgGCCCa -3'
miRNA:   3'- -CGC-GCAGC-GCa----AGCUGCA-----------CGgCGGGc -5'
12836 5' -59.8 NC_003387.1 + 4833 0.66 0.534021
Target:  5'- cGCGCuuGUCGg---CGACGUGCaCGCCg- -3'
miRNA:   3'- -CGCG--CAGCgcaaGCUGCACG-GCGGgc -5'
12836 5' -59.8 NC_003387.1 + 2517 0.66 0.534021
Target:  5'- gGUGaCG-CGCGggUCGuCGuUGCCGuCCCGg -3'
miRNA:   3'- -CGC-GCaGCGCa-AGCuGC-ACGGC-GGGC- -5'
12836 5' -59.8 NC_003387.1 + 19238 0.66 0.529952
Target:  5'- aCGCGaUCGCGggcgccgaccgccUCGGCGacuucgGCCGCCUu -3'
miRNA:   3'- cGCGC-AGCGCa------------AGCUGCa-----CGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 18185 0.66 0.523869
Target:  5'- aCGuCGUCgaGCGggUCGACGgGCaGCCCGa -3'
miRNA:   3'- cGC-GCAG--CGCa-AGCUGCaCGgCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 42697 0.66 0.523869
Target:  5'- gGCGCGcuUCgGCucgUCGuCGUcGUCGCCCGg -3'
miRNA:   3'- -CGCGC--AG-CGca-AGCuGCA-CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 32982 0.66 0.523869
Target:  5'- cGCGCGacuacgugccCGCGUUCGAgCGgGCCGUgCu -3'
miRNA:   3'- -CGCGCa---------GCGCAAGCU-GCaCGGCGgGc -5'
12836 5' -59.8 NC_003387.1 + 7605 0.66 0.513791
Target:  5'- aUGCGUcaccucguacacCGCGgcgUCGACGaccugGCCGCCg- -3'
miRNA:   3'- cGCGCA------------GCGCa--AGCUGCa----CGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 1999 0.66 0.513791
Target:  5'- -gGCGUCGagGUaacgcUCGACcuuGUGCgCGCCCa -3'
miRNA:   3'- cgCGCAGCg-CA-----AGCUG---CACG-GCGGGc -5'
12836 5' -59.8 NC_003387.1 + 51521 0.66 0.513791
Target:  5'- -gGCGcCGCGUUCGuCGcgggcaccaUGUCGUCCa -3'
miRNA:   3'- cgCGCaGCGCAAGCuGC---------ACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 32495 0.66 0.503794
Target:  5'- -gGCGcCGUGgugCGacgacugccgcuGCGUGCaCGCCCGg -3'
miRNA:   3'- cgCGCaGCGCaa-GC------------UGCACG-GCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 33559 0.66 0.501804
Target:  5'- cGUGCGggcCGCGcccucgacagcgUCGACGaGCCaccGCCCGg -3'
miRNA:   3'- -CGCGCa--GCGCa-----------AGCUGCaCGG---CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 3524 0.66 0.501804
Target:  5'- --cCGUUGCGggcucagcaacgUCGACGgccGCCGCCUGc -3'
miRNA:   3'- cgcGCAGCGCa-----------AGCUGCa--CGGCGGGC- -5'
12836 5' -59.8 NC_003387.1 + 13850 0.66 0.493881
Target:  5'- gGCGCGUCuagcuaaCGgcCGGCGaGCCGCCg- -3'
miRNA:   3'- -CGCGCAGc------GCaaGCUGCaCGGCGGgc -5'
12836 5' -59.8 NC_003387.1 + 48167 0.66 0.493881
Target:  5'- cGCGCgGUCGCGca-GGCGcagGCCcgcaagguGCCCGc -3'
miRNA:   3'- -CGCG-CAGCGCaagCUGCa--CGG--------CGGGC- -5'
12836 5' -59.8 NC_003387.1 + 18767 0.66 0.493881
Target:  5'- uUGCGUCGCGUgUCGAC-UGCCcuuuGUCgGg -3'
miRNA:   3'- cGCGCAGCGCA-AGCUGcACGG----CGGgC- -5'
12836 5' -59.8 NC_003387.1 + 39883 0.66 0.493881
Target:  5'- gGUGCGguguccaCGCcgcccUUCGGCuUGCCGCCCu -3'
miRNA:   3'- -CGCGCa------GCGc----AAGCUGcACGGCGGGc -5'
12836 5' -59.8 NC_003387.1 + 116 0.66 0.484059
Target:  5'- uGCGCGccCGCc-UCGAUGcgGUCGCCCu -3'
miRNA:   3'- -CGCGCa-GCGcaAGCUGCa-CGGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.