miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12842 5' -65.2 NC_003387.1 + 29046 0.66 0.26879
Target:  5'- uAUCCGGCCGccuugaGCCGCgUCauaaacugcGUCGcGGcGCUg -3'
miRNA:   3'- -UAGGCCGGC------UGGCGgAG---------CAGC-CC-CGA- -5'
12842 5' -65.2 NC_003387.1 + 12705 0.66 0.262403
Target:  5'- uUCCcGCgCGAgCGCC-CG-CGGGGCUc -3'
miRNA:   3'- uAGGcCG-GCUgGCGGaGCaGCCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 23890 0.66 0.262403
Target:  5'- -gCUGGCCGACgUGCUgcgCGccgaGGGGCUg -3'
miRNA:   3'- uaGGCCGGCUG-GCGGa--GCag--CCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 11678 0.66 0.250001
Target:  5'- gAUCgGGCUGAuuaUCGCCgcggUCGUCGGGcucGCUg -3'
miRNA:   3'- -UAGgCCGGCU---GGCGG----AGCAGCCC---CGA- -5'
12842 5' -65.2 NC_003387.1 + 3483 0.66 0.247579
Target:  5'- -cCCGGCgucgagcagccgcuCGGCCGCCUCGaccggcagauccgUUGcGGGCUc -3'
miRNA:   3'- uaGGCCG--------------GCUGGCGGAGC-------------AGC-CCCGA- -5'
12842 5' -65.2 NC_003387.1 + 2922 0.66 0.238086
Target:  5'- -aCCGGCUGAUCGUgUCG-CGGuucGGCg -3'
miRNA:   3'- uaGGCCGGCUGGCGgAGCaGCC---CCGa -5'
12842 5' -65.2 NC_003387.1 + 43465 0.66 0.238086
Target:  5'- -aCCGGCgGcgaCGUCcUGUCGGGGCg -3'
miRNA:   3'- uaGGCCGgCug-GCGGaGCAGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 35086 0.67 0.221109
Target:  5'- gGUCgGGCCGAggcUCGCCUUcaacgguucgagGUCGGcGGCc -3'
miRNA:   3'- -UAGgCCGGCU---GGCGGAG------------CAGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 32782 0.67 0.215683
Target:  5'- -cCCGGCCGcguACCGCCggGUCGaccuGGCg -3'
miRNA:   3'- uaGGCCGGC---UGGCGGagCAGCc---CCGa -5'
12842 5' -65.2 NC_003387.1 + 25966 0.67 0.215147
Target:  5'- -gCCaGGCCGAUCGCuggggguaugccgCUCGcCGGGGUc -3'
miRNA:   3'- uaGG-CCGGCUGGCG-------------GAGCaGCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 10672 0.67 0.210373
Target:  5'- --gCGGCugcgaccaCGGCCGCCUCGgCGGuGGCc -3'
miRNA:   3'- uagGCCG--------GCUGGCGGAGCaGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 40366 0.67 0.205175
Target:  5'- gAUCgCGGCCGggGCCaaggGCCUCGacgUCGGcGGCg -3'
miRNA:   3'- -UAG-GCCGGC--UGG----CGGAGC---AGCC-CCGa -5'
12842 5' -65.2 NC_003387.1 + 51031 0.67 0.205174
Target:  5'- gAUCCaGUCGACCGCCgccgcggUGUCGGuaccGGCc -3'
miRNA:   3'- -UAGGcCGGCUGGCGGa------GCAGCC----CCGa -5'
12842 5' -65.2 NC_003387.1 + 11968 0.67 0.205174
Target:  5'- -cUCGGUguauCGAcgcCCGCCUUGUCGaGGGCg -3'
miRNA:   3'- uaGGCCG----GCU---GGCGGAGCAGC-CCCGa -5'
12842 5' -65.2 NC_003387.1 + 17738 0.67 0.200088
Target:  5'- -cCCGGCCgGGCCGCCa----GGGGCc -3'
miRNA:   3'- uaGGCCGG-CUGGCGGagcagCCCCGa -5'
12842 5' -65.2 NC_003387.1 + 9895 0.67 0.200088
Target:  5'- -gCC-GCCauGAUCGCCUCGccgccgUCGGGGCUc -3'
miRNA:   3'- uaGGcCGG--CUGGCGGAGC------AGCCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 24707 0.68 0.195112
Target:  5'- -aUCGGCUuGCCGCgCUCGUCGGuGCc -3'
miRNA:   3'- uaGGCCGGcUGGCG-GAGCAGCCcCGa -5'
12842 5' -65.2 NC_003387.1 + 44642 0.68 0.190726
Target:  5'- -cCUGGCCG-CgGCCUCGgcgauccuggccgaGGGGCUg -3'
miRNA:   3'- uaGGCCGGCuGgCGGAGCag------------CCCCGA- -5'
12842 5' -65.2 NC_003387.1 + 699 0.68 0.185483
Target:  5'- ---gGGCCuuGAUCGCCUCGUCGucgaGGGCc -3'
miRNA:   3'- uaggCCGG--CUGGCGGAGCAGC----CCCGa -5'
12842 5' -65.2 NC_003387.1 + 46899 0.68 0.176276
Target:  5'- ---aGGCCGccCCGCCUUGcgCGGGGUUg -3'
miRNA:   3'- uaggCCGGCu-GGCGGAGCa-GCCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.