miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 5' -57.2 NC_003387.1 + 1544 0.66 0.563183
Target:  5'- ---cGAGgAUCGCCagGC-GUACGUGCa -3'
miRNA:   3'- aauaCUCgUGGCGGa-CGaCGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 14460 0.66 0.563183
Target:  5'- -cAUGGGUuCCGUUgGCUGCGUGUGCu -3'
miRNA:   3'- aaUACUCGuGGCGGaCGACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 6109 0.66 0.563183
Target:  5'- -cAUGGGCACCaagaccacgcaCCUGCcggUGCugGCGa -3'
miRNA:   3'- aaUACUCGUGGc----------GGACG---ACGugCGCg -5'
12843 5' -57.2 NC_003387.1 + 45772 0.66 0.563183
Target:  5'- cUGUG-GCGCCuGCCcgccGCUGCGCaggcCGCg -3'
miRNA:   3'- aAUACuCGUGG-CGGa---CGACGUGc---GCG- -5'
12843 5' -57.2 NC_003387.1 + 37338 0.66 0.563183
Target:  5'- ---cGAGCccCCGCCgcggGCUGCGCuaucuGCGg -3'
miRNA:   3'- aauaCUCGu-GGCGGa---CGACGUG-----CGCg -5'
12843 5' -57.2 NC_003387.1 + 48890 0.66 0.563183
Target:  5'- --cUGGGCcaccgcgaaAUCGCCUGCgaGCuGCGCGUu -3'
miRNA:   3'- aauACUCG---------UGGCGGACGa-CG-UGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 35846 0.66 0.563183
Target:  5'- cUAUGucguGCAUCGCCUggGCgUGCG-GCGCc -3'
miRNA:   3'- aAUACu---CGUGGCGGA--CG-ACGUgCGCG- -5'
12843 5' -57.2 NC_003387.1 + 10645 0.66 0.552267
Target:  5'- ---cGGGCACCc---GCaGCACGCGCg -3'
miRNA:   3'- aauaCUCGUGGcggaCGaCGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 31118 0.66 0.545748
Target:  5'- -cAUGuGCACCagcagcgccgcgucgGCCUcGCUGaugcCGCGCGCc -3'
miRNA:   3'- aaUACuCGUGG---------------CGGA-CGAC----GUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 14079 0.66 0.541416
Target:  5'- --uUGAuGCGCCGgaaCUGCaGCGCcaGCGCg -3'
miRNA:   3'- aauACU-CGUGGCg--GACGaCGUG--CGCG- -5'
12843 5' -57.2 NC_003387.1 + 3143 0.66 0.530637
Target:  5'- ---aGGcCACCGCCcgGCaGCGgGCGCa -3'
miRNA:   3'- aauaCUcGUGGCGGa-CGaCGUgCGCG- -5'
12843 5' -57.2 NC_003387.1 + 44273 0.66 0.530637
Target:  5'- --uUGGGCGCCGCCgcagGUcaGCGgGUGUg -3'
miRNA:   3'- aauACUCGUGGCGGa---CGa-CGUgCGCG- -5'
12843 5' -57.2 NC_003387.1 + 39565 0.66 0.530637
Target:  5'- ---cGAGCcugaccucgACgGCCUGUUcGCGCuGCGCa -3'
miRNA:   3'- aauaCUCG---------UGgCGGACGA-CGUG-CGCG- -5'
12843 5' -57.2 NC_003387.1 + 49744 0.66 0.519937
Target:  5'- --uUGAGCACCucggccuugcuGCCgguccacccGCUGauCACGCGCu -3'
miRNA:   3'- aauACUCGUGG-----------CGGa--------CGAC--GUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 20205 0.66 0.519937
Target:  5'- -----cGCACgGCCggGCgUGCACGCaGCg -3'
miRNA:   3'- aauacuCGUGgCGGa-CG-ACGUGCG-CG- -5'
12843 5' -57.2 NC_003387.1 + 26790 0.66 0.519937
Target:  5'- ----cAGCACCGCCUcGaCgagGC-CGCGCu -3'
miRNA:   3'- aauacUCGUGGCGGA-C-Ga--CGuGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 18417 0.66 0.518871
Target:  5'- ---cGGGCAgCGCgggCUGCucgggcagccacgUGUACGCGCg -3'
miRNA:   3'- aauaCUCGUgGCG---GACG-------------ACGUGCGCG- -5'
12843 5' -57.2 NC_003387.1 + 41955 0.66 0.509323
Target:  5'- ---cGAuGCagGCCGCCagcgaggaGCUGCGCGCGg -3'
miRNA:   3'- aauaCU-CG--UGGCGGa-------CGACGUGCGCg -5'
12843 5' -57.2 NC_003387.1 + 24462 0.66 0.509323
Target:  5'- ---cGAGCAgCGCgaggugcugaacCUGCUGCGCGUccugGCc -3'
miRNA:   3'- aauaCUCGUgGCG------------GACGACGUGCG----CG- -5'
12843 5' -57.2 NC_003387.1 + 51423 0.66 0.509323
Target:  5'- --cUGcGGCGCCGCCUcgaaCUGCGCcggucgaacgccGCGCa -3'
miRNA:   3'- aauAC-UCGUGGCGGAc---GACGUG------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.