Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12852 | 5' | -56.1 | NC_003387.1 | + | 52355 | 0.66 | 0.691795 |
Target: 5'- aUGGGCGCGGaacCGcUCGcGCagaUCGAcCGCg -3' miRNA: 3'- -ACCCGCGCCa--GC-AGCuUG---AGCUaGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 2923 | 0.66 | 0.691795 |
Target: 5'- cGGGCGaGGcucUCGUCGAACUgCGccaGCa -3' miRNA: 3'- aCCCGCgCC---AGCAGCUUGA-GCuagUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 27929 | 0.66 | 0.681003 |
Target: 5'- gUGGGCGCc-UCGggggGGGCUCGGUCGg -3' miRNA: 3'- -ACCCGCGccAGCag--CUUGAGCUAGUg -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 15633 | 0.66 | 0.681003 |
Target: 5'- aGGGCGCGcaCGgCGAGgUCGAcCAUg -3' miRNA: 3'- aCCCGCGCcaGCaGCUUgAGCUaGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 9031 | 0.66 | 0.681003 |
Target: 5'- cGGGCGCcGUCGgCGAuccACgccagGAUCGCg -3' miRNA: 3'- aCCCGCGcCAGCaGCU---UGag---CUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 46136 | 0.66 | 0.681002 |
Target: 5'- cGGGCgugaggugccGCGGUCGUCGuucuauGugUUGGUgCGCc -3' miRNA: 3'- aCCCG----------CGCCAGCAGC------UugAGCUA-GUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 14183 | 0.66 | 0.681002 |
Target: 5'- cGGGCGUGagggcGUCGUgauggcgcgCGAGCUUGAggGCg -3' miRNA: 3'- aCCCGCGC-----CAGCA---------GCUUGAGCUagUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 2516 | 0.66 | 0.670164 |
Target: 5'- aGGugacGCGCgGGUCGUCGuuGCcguccCGGUCGCg -3' miRNA: 3'- aCC----CGCG-CCAGCAGCu-UGa----GCUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 12303 | 0.66 | 0.670164 |
Target: 5'- cGGGC-CGGUucgcCGUCGccGACguaGGUCACg -3' miRNA: 3'- aCCCGcGCCA----GCAGC--UUGag-CUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 49925 | 0.66 | 0.665818 |
Target: 5'- gGGGCaaaCGGguuugcccucgaaCGUCGcgccguGCUCGAUCACg -3' miRNA: 3'- aCCCGc--GCCa------------GCAGCu-----UGAGCUAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 1219 | 0.66 | 0.65929 |
Target: 5'- gGGGCaUGGcUCGUCGAGCUgcuccugccCGGUCugGCg -3' miRNA: 3'- aCCCGcGCC-AGCAGCUUGA---------GCUAG--UG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 33990 | 0.66 | 0.65929 |
Target: 5'- cGGGuCGCGGUCGacgaCGAGCUgccUGcuGUCAUa -3' miRNA: 3'- aCCC-GCGCCAGCa---GCUUGA---GC--UAGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 10940 | 0.66 | 0.65929 |
Target: 5'- aGGGCGCGGUCGacUCugaGACUuuccgccgggUGAUCGg -3' miRNA: 3'- aCCCGCGCCAGC--AGc--UUGA----------GCUAGUg -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 11002 | 0.66 | 0.65929 |
Target: 5'- aGGGUauggGCGGcaguuUCGUUG-GCUCGAUgGCg -3' miRNA: 3'- aCCCG----CGCC-----AGCAGCuUGAGCUAgUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 11423 | 0.66 | 0.65929 |
Target: 5'- cGaGGUGCuGUCGUCGGuGCUCGugccCGCg -3' miRNA: 3'- aC-CCGCGcCAGCAGCU-UGAGCua--GUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 6780 | 0.66 | 0.658201 |
Target: 5'- --uGCGCGGgcCGUCGGcgaacacGCUCGggCACg -3' miRNA: 3'- accCGCGCCa-GCAGCU-------UGAGCuaGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 32734 | 0.66 | 0.652753 |
Target: 5'- -cGGCGCGGUgGccUCGGcgauucgggcugucaACUCGAUgCGCa -3' miRNA: 3'- acCCGCGCCAgC--AGCU---------------UGAGCUA-GUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 16322 | 0.66 | 0.648392 |
Target: 5'- -cGGCGcCGGU-GUCGAugUUGAcCGCg -3' miRNA: 3'- acCCGC-GCCAgCAGCUugAGCUaGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 20177 | 0.67 | 0.637479 |
Target: 5'- aGGGCGCGGUUGaugCGcuGCUgCGccUCGCa -3' miRNA: 3'- aCCCGCGCCAGCa--GCu-UGA-GCu-AGUG- -5' |
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12852 | 5' | -56.1 | NC_003387.1 | + | 15421 | 0.67 | 0.637479 |
Target: 5'- -cGGCGCGGUCGaCGAccGCgccgaCGAgCGCg -3' miRNA: 3'- acCCGCGCCAGCaGCU--UGa----GCUaGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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