miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 52643 0.66 0.387762
Target:  5'- aGU-CGAGCCaGcaaaCGCCCGCGGCgccgaucgaGCGCg -3'
miRNA:   3'- -CAuGCUCGGcCc---GUGGGCGUCG---------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 52466 0.7 0.239659
Target:  5'- -gGCGcAGCCaGGGCACUgcaCGCugagcaugucgggGGCGCGCa -3'
miRNA:   3'- caUGC-UCGG-CCCGUGG---GCG-------------UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 52334 0.66 0.413544
Target:  5'- gGUGCGAGUgcacucgacgagaUGGGCGCggaaCCGCu-CGCGCa -3'
miRNA:   3'- -CAUGCUCG-------------GCCCGUG----GGCGucGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 52017 0.67 0.330038
Target:  5'- -cACGAuGCCuugcGGCGCaaugaCGUGGCGCGCg -3'
miRNA:   3'- caUGCU-CGGc---CCGUGg----GCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 51560 0.66 0.40543
Target:  5'- cUACcgcuGCCGcuaaGCACCgCGCAuGCACGCa -3'
miRNA:   3'- cAUGcu--CGGCc---CGUGG-GCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 51401 0.67 0.345864
Target:  5'- --uCG-GCCGGugaccggcgaGCGCCUGCGGCGcCGCc -3'
miRNA:   3'- cauGCuCGGCC----------CGUGGGCGUCGU-GCG- -5'
12853 5' -60.9 NC_003387.1 + 51162 0.66 0.40543
Target:  5'- -gACGGG--GGGCGCCgGUAuGCACGUa -3'
miRNA:   3'- caUGCUCggCCCGUGGgCGU-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 50945 0.66 0.40543
Target:  5'- uUGCGGGCuuucagcuCGGGCGCCagCGCcGC-CGCc -3'
miRNA:   3'- cAUGCUCG--------GCCCGUGG--GCGuCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 50768 0.66 0.423597
Target:  5'- -gGCGcuGCCcGGCcagACCCGCGGCcggaucauGCGCu -3'
miRNA:   3'- caUGCu-CGGcCCG---UGGGCGUCG--------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 50520 0.7 0.234276
Target:  5'- -gGCGAGCaCGaGGCaccccugaGCCCGCGGUggcucgggggGCGCu -3'
miRNA:   3'- caUGCUCG-GC-CCG--------UGGGCGUCG----------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 50251 0.71 0.206197
Target:  5'- cGUACGucagcGCCGGGCggugcACCUcgGCcuGGCGCGCg -3'
miRNA:   3'- -CAUGCu----CGGCCCG-----UGGG--CG--UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 50157 0.67 0.359738
Target:  5'- -gACGGGUCGGcGUACacggcgaggaucugCCGCGGCGacCGCg -3'
miRNA:   3'- caUGCUCGGCC-CGUG--------------GGCGUCGU--GCG- -5'
12853 5' -60.9 NC_003387.1 + 49577 0.67 0.345864
Target:  5'- gGUGCGcccgcuGCCGGGCggugGCCUGgCAGUGCuGCc -3'
miRNA:   3'- -CAUGCu-----CGGCCCG----UGGGC-GUCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 49474 0.68 0.314752
Target:  5'- -gGCGcacuugguuucGGCCGGuGCGCCCGCccGGCgucgACGUg -3'
miRNA:   3'- caUGC-----------UCGGCC-CGUGGGCG--UCG----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 49393 0.69 0.272134
Target:  5'- -aACGAG-CGGGC-CUCGguGuCACGCc -3'
miRNA:   3'- caUGCUCgGCCCGuGGGCguC-GUGCG- -5'
12853 5' -60.9 NC_003387.1 + 49346 0.66 0.40543
Target:  5'- -aGCuGAGCguCGGGUACagcaCCGUGGUGCGCa -3'
miRNA:   3'- caUG-CUCG--GCCCGUG----GGCGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 49305 0.73 0.131579
Target:  5'- cUGCGucauGCCGGGCACCauCGaCAGCAgGUg -3'
miRNA:   3'- cAUGCu---CGGCCCGUGG--GC-GUCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 49150 0.67 0.337883
Target:  5'- -cACGuGUCGGuGCACaC-CAGCGCGCa -3'
miRNA:   3'- caUGCuCGGCC-CGUGgGcGUCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 49082 0.71 0.206197
Target:  5'- -cACGAGCCGgucgacGGCgauACCCGCAcGCcCGCu -3'
miRNA:   3'- caUGCUCGGC------CCG---UGGGCGU-CGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 49065 0.76 0.087288
Target:  5'- -gGCGcucaCCGGGCagGCUCGCGGCGCGCa -3'
miRNA:   3'- caUGCuc--GGCCCG--UGGGCGUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.