miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 51228 0.66 0.466744
Target:  5'- cGGCCGCGGccuggUGCUCGAcgucgacgcCCUGGCCc -3'
miRNA:   3'- cUUGGCGCUca---GCGAGCU---------GGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 50360 0.66 0.428823
Target:  5'- uGACCGCGuacguggCGCUCGACgCCgacggcGGCCu -3'
miRNA:   3'- cUUGGCGCuca----GCGAGCUG-GG------CCGGu -5'
12865 5' -60.4 NC_003387.1 + 49039 0.68 0.342546
Target:  5'- uGAACCGC-AGcCcCUCGGCCuCGGUCAg -3'
miRNA:   3'- -CUUGGCGcUCaGcGAGCUGG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 48635 0.68 0.319224
Target:  5'- -cGCCGCGGGUCGCgagcaugCGgcagaACCCGcacGCCGu -3'
miRNA:   3'- cuUGGCGCUCAGCGa------GC-----UGGGC---CGGU- -5'
12865 5' -60.4 NC_003387.1 + 48258 0.68 0.342546
Target:  5'- -cGCgGCGGGcucggCGgUCGGCUCGGCCu -3'
miRNA:   3'- cuUGgCGCUCa----GCgAGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 47840 0.66 0.447561
Target:  5'- uAGCCGUucGUCGC-CGcCUCGGCCu -3'
miRNA:   3'- cUUGGCGcuCAGCGaGCuGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 47005 0.7 0.24401
Target:  5'- cGGGCCGCcuGGU-GCUCGacuucauuggcgGCCCGGCCGg -3'
miRNA:   3'- -CUUGGCGc-UCAgCGAGC------------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 46900 0.67 0.39278
Target:  5'- cAGCC-CGGGUCG-UCGugCaCGGCCGc -3'
miRNA:   3'- cUUGGcGCUCAGCgAGCugG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 45913 0.67 0.39278
Target:  5'- cGAACCGCgccuuGAGcCGCagggCGACCaugucgcgcuCGGCCAg -3'
miRNA:   3'- -CUUGGCG-----CUCaGCGa---GCUGG----------GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 45190 0.66 0.457099
Target:  5'- aGGAUCGgGuGUUGCccggcccguUCGACCCgcGGCCGa -3'
miRNA:   3'- -CUUGGCgCuCAGCG---------AGCUGGG--CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44705 0.7 0.26951
Target:  5'- -cGCCGCGucGGUgaCGUUCGuuaugccucGCCCGGCCGg -3'
miRNA:   3'- cuUGGCGC--UCA--GCGAGC---------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44582 0.71 0.204237
Target:  5'- --gUCGCG-GUCGCU--GCCCGGCCGg -3'
miRNA:   3'- cuuGGCGCuCAGCGAgcUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44384 0.66 0.466744
Target:  5'- cGGCaCGUcgGGGUCGUcgaggUCGGCCgGGCCGu -3'
miRNA:   3'- cUUG-GCG--CUCAGCG-----AGCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44204 0.68 0.326863
Target:  5'- --cCCGCGAGcCGgUCGGCCCGagggacacuuGCCu -3'
miRNA:   3'- cuuGGCGCUCaGCgAGCUGGGC----------CGGu -5'
12865 5' -60.4 NC_003387.1 + 42470 0.66 0.438134
Target:  5'- cGACCuuGAGcccgCGCUCGGCgCGGCUc -3'
miRNA:   3'- cUUGGcgCUCa---GCGAGCUGgGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 42058 0.66 0.466744
Target:  5'- cGACCGCGGcgUGUaCGACCUGGCg- -3'
miRNA:   3'- cUUGGCGCUcaGCGaGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 41450 0.75 0.113877
Target:  5'- aGAGCCuugauCGAGUCGC-CGACgCGGCCGa -3'
miRNA:   3'- -CUUGGc----GCUCAGCGaGCUGgGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 40426 0.66 0.438134
Target:  5'- cGACgGCGAaccgGCcCGGCCCGGCCu -3'
miRNA:   3'- cUUGgCGCUcag-CGaGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 40405 0.71 0.225081
Target:  5'- -uACgCGCGAggaugcuGUCGCUCGugccgguGCCCGGCCc -3'
miRNA:   3'- cuUG-GCGCU-------CAGCGAGC-------UGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 37806 0.66 0.447561
Target:  5'- --cCCGCG-GUCGCagcagcgcgCGAUCgGGCCGa -3'
miRNA:   3'- cuuGGCGCuCAGCGa--------GCUGGgCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.