miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 3' -54.5 NC_003387.1 + 50816 0.66 0.77708
Target:  5'- aCGGGCGC--CAGCGAgggCGUCAuucagcgcGGGCu -3'
miRNA:   3'- -GUUCGCGcuGUUGCUa--GCAGU--------CCCGc -5'
12870 3' -54.5 NC_003387.1 + 22656 0.66 0.77708
Target:  5'- ---uCGCccCGGCGGcCGUCAGGGCGc -3'
miRNA:   3'- guucGCGcuGUUGCUaGCAGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 2599 0.66 0.77708
Target:  5'- --uGCGUaACGGCGAUCGUgacCAGGcGCu -3'
miRNA:   3'- guuCGCGcUGUUGCUAGCA---GUCC-CGc -5'
12870 3' -54.5 NC_003387.1 + 13175 0.66 0.77708
Target:  5'- cCGAGCGCGACcuggccgacGCGAUCGagaAGcGCGg -3'
miRNA:   3'- -GUUCGCGCUGu--------UGCUAGCag-UCcCGC- -5'
12870 3' -54.5 NC_003387.1 + 21253 0.66 0.766956
Target:  5'- -uGGUGCGccGCGACGAggaGUC-GGGCa -3'
miRNA:   3'- guUCGCGC--UGUUGCUag-CAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 1311 0.66 0.766956
Target:  5'- gCGGGCGaCGuCGACGA-CGUC-GGGUa -3'
miRNA:   3'- -GUUCGC-GCuGUUGCUaGCAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 20515 0.66 0.766956
Target:  5'- -cAGCGCGGCGucGCGcUCGUCGGuGaCGa -3'
miRNA:   3'- guUCGCGCUGU--UGCuAGCAGUCcC-GC- -5'
12870 3' -54.5 NC_003387.1 + 48955 0.66 0.765936
Target:  5'- gAGGCGCuGCGugagcugGCGAUCGUgCAcgcGGGCa -3'
miRNA:   3'- gUUCGCGcUGU-------UGCUAGCA-GU---CCCGc -5'
12870 3' -54.5 NC_003387.1 + 4031 0.66 0.756692
Target:  5'- cCAAGCGCGAgGGCGugCGgu-GGGUGc -3'
miRNA:   3'- -GUUCGCGCUgUUGCuaGCaguCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 21212 0.66 0.756692
Target:  5'- --cGCGUGgaACAGCGugcgggCG-CAGGGCGa -3'
miRNA:   3'- guuCGCGC--UGUUGCua----GCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 822 0.66 0.756692
Target:  5'- gAAGCGCGACGACGGccUGUaCGcGGCc -3'
miRNA:   3'- gUUCGCGCUGUUGCUa-GCA-GUcCCGc -5'
12870 3' -54.5 NC_003387.1 + 14182 0.66 0.746299
Target:  5'- gCGGGCGUGAgGGCG-UCGUgAuGGCGc -3'
miRNA:   3'- -GUUCGCGCUgUUGCuAGCAgUcCCGC- -5'
12870 3' -54.5 NC_003387.1 + 16528 0.66 0.745254
Target:  5'- gAGGCGCcACAGCaGcgCGuacagguggcagaUCGGGGCGg -3'
miRNA:   3'- gUUCGCGcUGUUG-CuaGC-------------AGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 635 0.66 0.73579
Target:  5'- -cAGUGgGGCAgGCGGUCGagUAGGGCc -3'
miRNA:   3'- guUCGCgCUGU-UGCUAGCa-GUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 49167 0.66 0.73579
Target:  5'- -cAGCGCGcaGGCGGUCGcgCAGGcgGCGg -3'
miRNA:   3'- guUCGCGCugUUGCUAGCa-GUCC--CGC- -5'
12870 3' -54.5 NC_003387.1 + 19117 0.66 0.73579
Target:  5'- gAGGCGCG-CAGuCGAUCaUCGacccgaccGGGCGg -3'
miRNA:   3'- gUUCGCGCuGUU-GCUAGcAGU--------CCCGC- -5'
12870 3' -54.5 NC_003387.1 + 18698 0.66 0.725176
Target:  5'- cCAGGUGCGGgucGCGcagCGcCAGGGCGc -3'
miRNA:   3'- -GUUCGCGCUgu-UGCua-GCaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 26523 0.66 0.724109
Target:  5'- gAGGcCGaCGACGACGAgcCGUCAGGcaagcacGCGa -3'
miRNA:   3'- gUUC-GC-GCUGUUGCUa-GCAGUCC-------CGC- -5'
12870 3' -54.5 NC_003387.1 + 40903 0.67 0.714469
Target:  5'- aAGGcCGCGAUcGCGGUCGggCGGuGGCc -3'
miRNA:   3'- gUUC-GCGCUGuUGCUAGCa-GUC-CCGc -5'
12870 3' -54.5 NC_003387.1 + 46372 0.67 0.714469
Target:  5'- cCAAGCGCGAC-ACGGUgGgcgCAGcGUGu -3'
miRNA:   3'- -GUUCGCGCUGuUGCUAgCa--GUCcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.