miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12873 3' -55 NC_003387.1 + 38221 0.65 0.751519
Target:  5'- cGG-GUCGAUcgACAgcGCGCCCUuaguggccucgCCGAGc -3'
miRNA:   3'- -CCaCAGUUG--UGUuuCGCGGGG-----------GGCUC- -5'
12873 3' -55 NC_003387.1 + 9311 0.65 0.751519
Target:  5'- ---aUCAACGCGAcugacaCGgCCCCCGAGg -3'
miRNA:   3'- ccacAGUUGUGUUuc----GCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 49295 0.65 0.751519
Target:  5'- aGGUGcUCGccgaGCACGccGAGgGCacggCCCCGAGc -3'
miRNA:   3'- -CCAC-AGU----UGUGU--UUCgCGg---GGGGCUC- -5'
12873 3' -55 NC_003387.1 + 394 0.65 0.751519
Target:  5'- --cGUCGaguGCACu---CGCaCCCCCGAGg -3'
miRNA:   3'- ccaCAGU---UGUGuuucGCG-GGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 41259 0.66 0.74109
Target:  5'- --gGUCGugACGcugaccguGCGCCCCCuCGAc -3'
miRNA:   3'- ccaCAGUugUGUuu------CGCGGGGG-GCUc -5'
12873 3' -55 NC_003387.1 + 46204 0.66 0.73055
Target:  5'- gGGUGUCA------GGUGCCCaCCCGGc -3'
miRNA:   3'- -CCACAGUuguguuUCGCGGG-GGGCUc -5'
12873 3' -55 NC_003387.1 + 27831 0.66 0.709185
Target:  5'- cGGUgccGUCggUggACAGGGCGCagccaCCgCCCGAGg -3'
miRNA:   3'- -CCA---CAGuuG--UGUUUCGCG-----GG-GGGCUC- -5'
12873 3' -55 NC_003387.1 + 37599 0.66 0.708108
Target:  5'- cGG-GUCGcGCACAgggucAGGCGCCCCguugacgCCGAu -3'
miRNA:   3'- -CCaCAGU-UGUGU-----UUCGCGGGG-------GGCUc -5'
12873 3' -55 NC_003387.1 + 34100 0.66 0.695128
Target:  5'- gGGcGUCGGCAUGacguacgacgaaacGAGCGCCa-CCGAGg -3'
miRNA:   3'- -CCaCAGUUGUGU--------------UUCGCGGggGGCUC- -5'
12873 3' -55 NC_003387.1 + 27131 0.67 0.687516
Target:  5'- cGG-GUCGAgGCc--GUGCCCgCCGGGg -3'
miRNA:   3'- -CCaCAGUUgUGuuuCGCGGGgGGCUC- -5'
12873 3' -55 NC_003387.1 + 40516 0.67 0.676596
Target:  5'- cGGUGgccCGGCACcgagcAGCGaCCUgCCCGAGg -3'
miRNA:   3'- -CCACa--GUUGUGuu---UCGC-GGG-GGGCUC- -5'
12873 3' -55 NC_003387.1 + 4416 0.67 0.665633
Target:  5'- --cGUCGACgccgagcuggGCAAGGCGUUCgCCGAGc -3'
miRNA:   3'- ccaCAGUUG----------UGUUUCGCGGGgGGCUC- -5'
12873 3' -55 NC_003387.1 + 5293 0.67 0.665633
Target:  5'- gGGUGUUGuGCAUGAGGCcCUCCUCGGGc -3'
miRNA:   3'- -CCACAGU-UGUGUUUCGcGGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 49482 0.67 0.643625
Target:  5'- uGGUuUCGGC-CGGuGCGCCCgCCCGGc -3'
miRNA:   3'- -CCAcAGUUGuGUUuCGCGGG-GGGCUc -5'
12873 3' -55 NC_003387.1 + 227 0.67 0.643625
Target:  5'- aGG-GUUGACAU---GCGCgCCCCCGAc -3'
miRNA:   3'- -CCaCAGUUGUGuuuCGCG-GGGGGCUc -5'
12873 3' -55 NC_003387.1 + 1555 0.67 0.643625
Target:  5'- aGGcGUacguGCAUAccGGCGCCCCCCGu- -3'
miRNA:   3'- -CCaCAgu--UGUGUu-UCGCGGGGGGCuc -5'
12873 3' -55 NC_003387.1 + 29839 0.67 0.642523
Target:  5'- ---aUCugcuACACGAGGCGCCCCUgucgauucgucggCGAGg -3'
miRNA:   3'- ccacAGu---UGUGUUUCGCGGGGG-------------GCUC- -5'
12873 3' -55 NC_003387.1 + 24774 0.68 0.6326
Target:  5'- -----gAGCACGccGAGCGCCCCgaCCGAGc -3'
miRNA:   3'- ccacagUUGUGU--UUCGCGGGG--GGCUC- -5'
12873 3' -55 NC_003387.1 + 47584 0.68 0.588591
Target:  5'- ----cCGGCGCcGAGCGCCCCUCGu- -3'
miRNA:   3'- ccacaGUUGUGuUUCGCGGGGGGCuc -5'
12873 3' -55 NC_003387.1 + 37015 0.68 0.588591
Target:  5'- aGGU-UCAGCACAuuGCugGCCUCgCCGAGc -3'
miRNA:   3'- -CCAcAGUUGUGUuuCG--CGGGG-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.