miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 3' -59.1 NC_003387.1 + 41081 0.66 0.492943
Target:  5'- aGCGCGACGUugaauaGCcaCUGCGCg-GCGg- -3'
miRNA:   3'- aCGCGCUGCG------CGa-GACGCGaaCGCac -5'
12876 3' -59.1 NC_003387.1 + 38432 0.66 0.489899
Target:  5'- aUGCGCcgcuuuuuauagucGACGCGCUCgggcuugGCGCcgauCGUGu -3'
miRNA:   3'- -ACGCG--------------CUGCGCGAGa------CGCGaac-GCAC- -5'
12876 3' -59.1 NC_003387.1 + 8280 0.66 0.482829
Target:  5'- cGCGCaGCGC-CUCgUGCGCgucgGCGg- -3'
miRNA:   3'- aCGCGcUGCGcGAG-ACGCGaa--CGCac -5'
12876 3' -59.1 NC_003387.1 + 48091 0.66 0.482829
Target:  5'- cGgGUGGCGCuGCcgCUGCGCccGCGgUGg -3'
miRNA:   3'- aCgCGCUGCG-CGa-GACGCGaaCGC-AC- -5'
12876 3' -59.1 NC_003387.1 + 43279 0.66 0.481823
Target:  5'- aGCGUgcucaugGACGUGCUCaGCGCggUGC-UGg -3'
miRNA:   3'- aCGCG-------CUGCGCGAGaCGCGa-ACGcAC- -5'
12876 3' -59.1 NC_003387.1 + 30866 0.66 0.478812
Target:  5'- gUGCGCGucggcaccuggUGCGCcgguguccacacgCUGCGCUUGCGc- -3'
miRNA:   3'- -ACGCGCu----------GCGCGa------------GACGCGAACGCac -5'
12876 3' -59.1 NC_003387.1 + 1772 0.66 0.472816
Target:  5'- gGCGCuuCGCGCUg-GCGUucagaucagcuUUGCGUGc -3'
miRNA:   3'- aCGCGcuGCGCGAgaCGCG-----------AACGCAC- -5'
12876 3' -59.1 NC_003387.1 + 22510 0.66 0.462909
Target:  5'- --gGCGGCGCGCUC-GaCGUcgGCGUa -3'
miRNA:   3'- acgCGCUGCGCGAGaC-GCGaaCGCAc -5'
12876 3' -59.1 NC_003387.1 + 6677 0.66 0.462909
Target:  5'- gUGCGCugcagauccucGACGaCGCUCgGCGuCUUGCa-- -3'
miRNA:   3'- -ACGCG-----------CUGC-GCGAGaCGC-GAACGcac -5'
12876 3' -59.1 NC_003387.1 + 27270 0.66 0.462909
Target:  5'- aGcCGCGACGCGggCaGCGCgcccUGCGa- -3'
miRNA:   3'- aC-GCGCUGCGCgaGaCGCGa---ACGCac -5'
12876 3' -59.1 NC_003387.1 + 31022 0.67 0.434814
Target:  5'- gGCGCGGgcCGCGCUCgccgaggcggccaggGCGUcgGCGa- -3'
miRNA:   3'- aCGCGCU--GCGCGAGa--------------CGCGaaCGCac -5'
12876 3' -59.1 NC_003387.1 + 4565 0.67 0.433863
Target:  5'- cUGCGCGAcCGCGCgggccUCggugGCGCgcUGCGc- -3'
miRNA:   3'- -ACGCGCU-GCGCG-----AGa---CGCGa-ACGCac -5'
12876 3' -59.1 NC_003387.1 + 40849 0.67 0.433863
Target:  5'- gUGCGCGACGCGCUCacCGacacaaUGUGg- -3'
miRNA:   3'- -ACGCGCUGCGCGAGacGCga----ACGCac -5'
12876 3' -59.1 NC_003387.1 + 45859 0.67 0.424418
Target:  5'- cUGCGCGAgcUGCuGCggCUGCGCgccGCGg- -3'
miRNA:   3'- -ACGCGCU--GCG-CGa-GACGCGaa-CGCac -5'
12876 3' -59.1 NC_003387.1 + 27161 0.67 0.405903
Target:  5'- aGCGCGuCGCGaagCUGCuGCcccucgGCGUGu -3'
miRNA:   3'- aCGCGCuGCGCga-GACG-CGaa----CGCAC- -5'
12876 3' -59.1 NC_003387.1 + 43131 0.67 0.404991
Target:  5'- aGCGCGAacgUGCGCUCaaggucggacaggUGCGCgugcugGCGa- -3'
miRNA:   3'- aCGCGCU---GCGCGAG-------------ACGCGaa----CGCac -5'
12876 3' -59.1 NC_003387.1 + 35867 0.67 0.396838
Target:  5'- cGUGCGGCGCcauCUCcucGCGCg-GCGUGa -3'
miRNA:   3'- aCGCGCUGCGc--GAGa--CGCGaaCGCAC- -5'
12876 3' -59.1 NC_003387.1 + 32495 0.67 0.396838
Target:  5'- gGCGcCGugGUGCgacgaCUGcCGCU-GCGUGc -3'
miRNA:   3'- aCGC-GCugCGCGa----GAC-GCGAaCGCAC- -5'
12876 3' -59.1 NC_003387.1 + 994 0.67 0.396838
Target:  5'- gGCGCcgaccggggucgGAUGCGCUgcggccUUGCGUUUGCGg- -3'
miRNA:   3'- aCGCG------------CUGCGCGA------GACGCGAACGCac -5'
12876 3' -59.1 NC_003387.1 + 43115 0.68 0.379104
Target:  5'- aGCGCGACgGCGCg--GCGCc-GCGgUGg -3'
miRNA:   3'- aCGCGCUG-CGCGagaCGCGaaCGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.