miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12894 5' -53.9 NC_003387.1 + 51285 0.66 0.814431
Target:  5'- cGGCcGACGUgcaggcucagCACcucgGUGCCGAGGaUCGc -3'
miRNA:   3'- -CCGaCUGUAaa--------GUG----CGCGGCUCC-AGC- -5'
12894 5' -53.9 NC_003387.1 + 2261 0.66 0.814431
Target:  5'- gGGCUG-CGUgg-GCGCcCCGAGGUg- -3'
miRNA:   3'- -CCGACuGUAaagUGCGcGGCUCCAgc -5'
12894 5' -53.9 NC_003387.1 + 24653 0.66 0.814431
Target:  5'- uGCUGcGCGaggUCGCcaGCGCCGAGGg-- -3'
miRNA:   3'- cCGAC-UGUaa-AGUG--CGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 18026 0.66 0.804941
Target:  5'- cGGCUGuACA----GCGUGcCCGAGG-CGg -3'
miRNA:   3'- -CCGAC-UGUaaagUGCGC-GGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 43080 0.66 0.804941
Target:  5'- gGGCUGGCAcaccagggUgaCGgGCGCCG-GGUaCGa -3'
miRNA:   3'- -CCGACUGU--------AaaGUgCGCGGCuCCA-GC- -5'
12894 5' -53.9 NC_003387.1 + 21468 0.66 0.795268
Target:  5'- cGCUGGCGcagCcCGCGCC--GGUCGg -3'
miRNA:   3'- cCGACUGUaaaGuGCGCGGcuCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 32116 0.66 0.775417
Target:  5'- gGGCUGACGcaaugcaacUCAUGCGCCacaucGAGGa-- -3'
miRNA:   3'- -CCGACUGUaa-------AGUGCGCGG-----CUCCagc -5'
12894 5' -53.9 NC_003387.1 + 51360 0.66 0.775417
Target:  5'- aGCUGGCAgggcucggggUCGuCGUccucGUCGAGGUCGu -3'
miRNA:   3'- cCGACUGUaa--------AGU-GCG----CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 27957 0.66 0.771372
Target:  5'- cGGCUGGCcgggcuccugcUCGacCGCGCCGGuGUCGa -3'
miRNA:   3'- -CCGACUGuaa--------AGU--GCGCGGCUcCAGC- -5'
12894 5' -53.9 NC_003387.1 + 22931 0.66 0.765261
Target:  5'- aGGCUGAUcaGUgcgccUUGCGCGCCGAucGcGUUGg -3'
miRNA:   3'- -CCGACUG--UAa----AGUGCGCGGCU--C-CAGC- -5'
12894 5' -53.9 NC_003387.1 + 32883 0.67 0.754968
Target:  5'- cGCUGAgAUUgcuugaGCuGCGCC-AGGUCGa -3'
miRNA:   3'- cCGACUgUAAag----UG-CGCGGcUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 50892 0.67 0.754968
Target:  5'- cGUUGuACAggUCGgcCGCGgUGAGGUCGa -3'
miRNA:   3'- cCGAC-UGUaaAGU--GCGCgGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 6543 0.67 0.753931
Target:  5'- uGCUGuCGUccCugGCGCugcguuaCGAGGUCGc -3'
miRNA:   3'- cCGACuGUAaaGugCGCG-------GCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 6041 0.67 0.744547
Target:  5'- uGGCUuuCuccUUUCuCcCGCCGAGGUCGg -3'
miRNA:   3'- -CCGAcuGu--AAAGuGcGCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 47932 0.67 0.734012
Target:  5'- cGGCaGGCAUgggCACGaCGCCGuguGGgccgCGa -3'
miRNA:   3'- -CCGaCUGUAaa-GUGC-GCGGCu--CCa---GC- -5'
12894 5' -53.9 NC_003387.1 + 28931 0.67 0.734012
Target:  5'- cGGC-GGCGaggUUCACGC-CUGAGuGUCGu -3'
miRNA:   3'- -CCGaCUGUa--AAGUGCGcGGCUC-CAGC- -5'
12894 5' -53.9 NC_003387.1 + 42152 0.67 0.723374
Target:  5'- gGGCacccGCAgcaCGCGCGCC-AGGUCGu -3'
miRNA:   3'- -CCGac--UGUaaaGUGCGCGGcUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 3299 0.67 0.723374
Target:  5'- cGGCcgccGAC---UCGgGCGCCGAGGUg- -3'
miRNA:   3'- -CCGa---CUGuaaAGUgCGCGGCUCCAgc -5'
12894 5' -53.9 NC_003387.1 + 10742 0.67 0.712645
Target:  5'- cGGCcGugGUcgCAgcCGCGUCGAGGcCGa -3'
miRNA:   3'- -CCGaCugUAaaGU--GCGCGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 10019 0.67 0.709409
Target:  5'- gGGCgacGACGacgacgagccgaaGCGCGCCGAGGgcgCGg -3'
miRNA:   3'- -CCGa--CUGUaaag---------UGCGCGGCUCCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.