miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12903 5' -56.3 NC_003387.1 + 11452 0.66 0.643134
Target:  5'- cGCUGCAgcUCGcCGCCGGGGCGCucaaguucaugGCCGa -3'
miRNA:   3'- -UGGUGUa-AGU-GUGGUCCCGUG-----------CGGUc -5'
12903 5' -56.3 NC_003387.1 + 12420 0.66 0.632061
Target:  5'- cGCCGCugugggagCugAUUAGGGCGCuGCCGa -3'
miRNA:   3'- -UGGUGuaa-----GugUGGUCCCGUG-CGGUc -5'
12903 5' -56.3 NC_003387.1 + 30152 0.66 0.620989
Target:  5'- uACUGCAUgcUCGCcCCGGcGGC-CGUCAGg -3'
miRNA:   3'- -UGGUGUA--AGUGuGGUC-CCGuGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 18035 0.66 0.617669
Target:  5'- gACCgACGacCACACCGGGGUcugcccguccucggGCGCCu- -3'
miRNA:   3'- -UGG-UGUaaGUGUGGUCCCG--------------UGCGGuc -5'
12903 5' -56.3 NC_003387.1 + 13502 0.66 0.609926
Target:  5'- uGCCGagguaGUUCACACCGGcGaGCGCCGa -3'
miRNA:   3'- -UGGUg----UAAGUGUGGUCcCgUGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 48851 0.66 0.609926
Target:  5'- cACgGCGUgCACGCCcuGGuGCGCaGCCGGa -3'
miRNA:   3'- -UGgUGUAaGUGUGGu-CC-CGUG-CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 27349 0.66 0.608821
Target:  5'- uGCgGCGUUCuccucgcGCgACCA-GGCAUGCCGGg -3'
miRNA:   3'- -UGgUGUAAG-------UG-UGGUcCCGUGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 33826 0.66 0.598883
Target:  5'- cGCCGCcgUUGCccuuGCCGGGGUGCcgcuuagacgggGCCAGc -3'
miRNA:   3'- -UGGUGuaAGUG----UGGUCCCGUG------------CGGUC- -5'
12903 5' -56.3 NC_003387.1 + 30536 0.66 0.598883
Target:  5'- cACUugGUgCACAgCAGGGCGCcgugcucgGCCAc -3'
miRNA:   3'- -UGGugUAaGUGUgGUCCCGUG--------CGGUc -5'
12903 5' -56.3 NC_003387.1 + 29310 0.66 0.587869
Target:  5'- gACCGCGggcacgaGCGCCAGGcCGCGCUg- -3'
miRNA:   3'- -UGGUGUaag----UGUGGUCCcGUGCGGuc -5'
12903 5' -56.3 NC_003387.1 + 7285 0.66 0.587869
Target:  5'- gUgACGUUCACGcCCGGcGGUAacuCGCCGGg -3'
miRNA:   3'- uGgUGUAAGUGU-GGUC-CCGU---GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 30409 0.66 0.587869
Target:  5'- gGCCGCcgg-GCACCAGGaaaaaGCGcCGCCAGc -3'
miRNA:   3'- -UGGUGuaagUGUGGUCC-----CGU-GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 13245 0.67 0.576892
Target:  5'- gGCCgACAgcgaucugCGCACCaAGGGCAagGCCAc -3'
miRNA:   3'- -UGG-UGUaa------GUGUGG-UCCCGUg-CGGUc -5'
12903 5' -56.3 NC_003387.1 + 37185 0.67 0.576892
Target:  5'- gGCCgACGUcgagCACGuCgAGGGCGCGCaCGGc -3'
miRNA:   3'- -UGG-UGUAa---GUGU-GgUCCCGUGCG-GUC- -5'
12903 5' -56.3 NC_003387.1 + 21632 0.67 0.576892
Target:  5'- gGCCACGgucugCACGacgaCGcGGGCGuCGCCGGu -3'
miRNA:   3'- -UGGUGUaa---GUGUg---GU-CCCGU-GCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 26164 0.67 0.576892
Target:  5'- gAUCGCGUgcuggaaauacgUCACGCC-GGGCGCaGCCu- -3'
miRNA:   3'- -UGGUGUA------------AGUGUGGuCCCGUG-CGGuc -5'
12903 5' -56.3 NC_003387.1 + 51945 0.67 0.575796
Target:  5'- gACgGCcUUCGCgaucACCGGGGCcaccgcggcagcgACGCCGGu -3'
miRNA:   3'- -UGgUGuAAGUG----UGGUCCCG-------------UGCGGUC- -5'
12903 5' -56.3 NC_003387.1 + 44721 0.67 0.565961
Target:  5'- gGCCAgGaUCGCcgaggccgcgGCCAGGGCcacacgcucGCGCCAc -3'
miRNA:   3'- -UGGUgUaAGUG----------UGGUCCCG---------UGCGGUc -5'
12903 5' -56.3 NC_003387.1 + 50701 0.67 0.565961
Target:  5'- cCCugAU--GCGCCuGGGCGCGCacaAGg -3'
miRNA:   3'- uGGugUAagUGUGGuCCCGUGCGg--UC- -5'
12903 5' -56.3 NC_003387.1 + 47712 0.67 0.565961
Target:  5'- aACCACAUg-ACACCGGcGCAgGCCc- -3'
miRNA:   3'- -UGGUGUAagUGUGGUCcCGUgCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.