miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 3' -54 NC_003387.1 + 22495 0.66 0.76715
Target:  5'- -cCGGGCGacggccucggcGGCGCGCu-CGACGUcGGCg -3'
miRNA:   3'- caGUCCGU-----------UCGUGCGcuGCUGUA-CUG- -5'
12933 3' -54 NC_003387.1 + 17587 0.66 0.76715
Target:  5'- uGUCGuGCGGcCACGgcuuaGGCGGCAUGACg -3'
miRNA:   3'- -CAGUcCGUUcGUGCg----CUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 38522 0.66 0.76715
Target:  5'- ---cGGCAAGUgaGCGcCGACGGCgucaugGUGGCg -3'
miRNA:   3'- caguCCGUUCG--UGC-GCUGCUG------UACUG- -5'
12933 3' -54 NC_003387.1 + 35166 0.66 0.76715
Target:  5'- --aGGGCGGGCugACGCGcgaacgguACGACcgGAUa -3'
miRNA:   3'- cagUCCGUUCG--UGCGC--------UGCUGuaCUG- -5'
12933 3' -54 NC_003387.1 + 19951 0.66 0.756709
Target:  5'- cGUCGGGCAaaGGUAcCGCGuCGACuucACa -3'
miRNA:   3'- -CAGUCCGU--UCGU-GCGCuGCUGuacUG- -5'
12933 3' -54 NC_003387.1 + 22441 0.66 0.756709
Target:  5'- -cCAGGCGcgGGC-CGCGGCGu--UGGCc -3'
miRNA:   3'- caGUCCGU--UCGuGCGCUGCuguACUG- -5'
12933 3' -54 NC_003387.1 + 45492 0.66 0.756709
Target:  5'- cUCAGGCAGGauuUGCGuCGGCcgGGu -3'
miRNA:   3'- cAGUCCGUUCgu-GCGCuGCUGuaCUg -5'
12933 3' -54 NC_003387.1 + 1611 0.66 0.756709
Target:  5'- uUCGGcCGGGCGCGUGugGGCAg--- -3'
miRNA:   3'- cAGUCcGUUCGUGCGCugCUGUacug -5'
12933 3' -54 NC_003387.1 + 11611 0.66 0.755657
Target:  5'- gGUCGGGCAucacgaaGGC-CGCGACcGCcgcgcaGUGGCu -3'
miRNA:   3'- -CAGUCCGU-------UCGuGCGCUGcUG------UACUG- -5'
12933 3' -54 NC_003387.1 + 25268 0.66 0.75355
Target:  5'- gGUCGGGCAGGuCGCacaucgggcagucaGCcagGGCGACGUcGGCg -3'
miRNA:   3'- -CAGUCCGUUC-GUG--------------CG---CUGCUGUA-CUG- -5'
12933 3' -54 NC_003387.1 + 35454 0.66 0.746135
Target:  5'- cGUUGGaCGAGCGCGCaguccGCGAgGUGACc -3'
miRNA:   3'- -CAGUCcGUUCGUGCGc----UGCUgUACUG- -5'
12933 3' -54 NC_003387.1 + 1307 0.66 0.746135
Target:  5'- -cCuGGCGGGCgACGuCGACGACGUcGGg -3'
miRNA:   3'- caGuCCGUUCG-UGC-GCUGCUGUA-CUg -5'
12933 3' -54 NC_003387.1 + 4158 0.66 0.746135
Target:  5'- -gCGGGCGucgauGCACGCcuGGC-ACGUGACc -3'
miRNA:   3'- caGUCCGUu----CGUGCG--CUGcUGUACUG- -5'
12933 3' -54 NC_003387.1 + 13909 0.66 0.73544
Target:  5'- cGUCGGGU-GGCGCcCGAuCGGCAccaUGACg -3'
miRNA:   3'- -CAGUCCGuUCGUGcGCU-GCUGU---ACUG- -5'
12933 3' -54 NC_003387.1 + 40128 0.67 0.713738
Target:  5'- cGUCGGGCAAGUucaagGCccaCGGCGACAccgucGGCg -3'
miRNA:   3'- -CAGUCCGUUCG-----UGc--GCUGCUGUa----CUG- -5'
12933 3' -54 NC_003387.1 + 27451 0.67 0.702755
Target:  5'- -aCGGGuCGAgcGCACGCG-CGACGUcGGCc -3'
miRNA:   3'- caGUCC-GUU--CGUGCGCuGCUGUA-CUG- -5'
12933 3' -54 NC_003387.1 + 48719 0.67 0.702755
Target:  5'- uGUCGaGCAccguGCGcCGCGACGAgucCAUGACc -3'
miRNA:   3'- -CAGUcCGUu---CGU-GCGCUGCU---GUACUG- -5'
12933 3' -54 NC_003387.1 + 10293 0.67 0.702755
Target:  5'- cUCGGGCGcucAGCGCGCaGGCcagGACGcgGGCa -3'
miRNA:   3'- cAGUCCGU---UCGUGCG-CUG---CUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 18433 0.67 0.702755
Target:  5'- cUCGGGCAGccacguGUACGCG-CGcacCGUGACg -3'
miRNA:   3'- cAGUCCGUU------CGUGCGCuGCu--GUACUG- -5'
12933 3' -54 NC_003387.1 + 20212 0.67 0.6917
Target:  5'- -cCGGGCGuGCACGCaGCGGCAg--- -3'
miRNA:   3'- caGUCCGUuCGUGCGcUGCUGUacug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.