miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 5' -62.8 NC_003387.1 + 27950 0.66 0.335861
Target:  5'- cGGuCGGggcGCUcGGCGUGCUcGGCUUGg -3'
miRNA:   3'- cCC-GCCa--CGGcCCGUACGA-CCGAGCa -5'
12933 5' -62.8 NC_003387.1 + 10640 0.66 0.335861
Target:  5'- cGGCGGUGaaGGGUAcgGCguucGGcCUCGa -3'
miRNA:   3'- cCCGCCACggCCCGUa-CGa---CC-GAGCa -5'
12933 5' -62.8 NC_003387.1 + 42078 0.66 0.335861
Target:  5'- uGGcGCGcGUGCUGcGgGUGCccGGCUCGUa -3'
miRNA:   3'- -CC-CGC-CACGGCcCgUACGa-CCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 39272 0.66 0.328124
Target:  5'- cGGCGa-GCUGGGCAaGCUG-CUCGa -3'
miRNA:   3'- cCCGCcaCGGCCCGUaCGACcGAGCa -5'
12933 5' -62.8 NC_003387.1 + 48971 0.66 0.320519
Target:  5'- uGGCGaucGUGCacgCGGGCAUGC-GGC-CGUc -3'
miRNA:   3'- cCCGC---CACG---GCCCGUACGaCCGaGCA- -5'
12933 5' -62.8 NC_003387.1 + 29317 0.66 0.320519
Target:  5'- aGGCGccgcgcuUGUCGGGCAUGUUcaGCUCGUc -3'
miRNA:   3'- cCCGCc------ACGGCCCGUACGAc-CGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 48826 0.66 0.320519
Target:  5'- aGGCGGUcaggGUCGGGCAgcgGCgccGGUUCc- -3'
miRNA:   3'- cCCGCCA----CGGCCCGUa--CGa--CCGAGca -5'
12933 5' -62.8 NC_003387.1 + 52407 0.66 0.320519
Target:  5'- -uGCGuGUcGCCGGGCucggGCUccaccGGCUCGg -3'
miRNA:   3'- ccCGC-CA-CGGCCCGua--CGA-----CCGAGCa -5'
12933 5' -62.8 NC_003387.1 + 14805 0.67 0.298502
Target:  5'- cGGCGGUGCCgagccacgcGGGCA-GC-GGgUCGc -3'
miRNA:   3'- cCCGCCACGG---------CCCGUaCGaCCgAGCa -5'
12933 5' -62.8 NC_003387.1 + 14171 0.67 0.298502
Target:  5'- cGGGcCGG-GCCgcGGGCGUGagGGCgUCGUg -3'
miRNA:   3'- -CCC-GCCaCGG--CCCGUACgaCCG-AGCA- -5'
12933 5' -62.8 NC_003387.1 + 31188 0.67 0.296366
Target:  5'- cGGGCGucGCCGGugcugauacucagcGCAgcgGCcGGCUCGUg -3'
miRNA:   3'- -CCCGCcaCGGCC--------------CGUa--CGaCCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 3418 0.67 0.291428
Target:  5'- gGGGCcGUGCCcucGGCGUGCUcGGCgagCa- -3'
miRNA:   3'- -CCCGcCACGGc--CCGUACGA-CCGa--Gca -5'
12933 5' -62.8 NC_003387.1 + 49199 0.67 0.284485
Target:  5'- gGGGCGGcgGCgGgGGCAcugGCgccGGUUCGUu -3'
miRNA:   3'- -CCCGCCa-CGgC-CCGUa--CGa--CCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 48937 0.67 0.270994
Target:  5'- cGGCGGguugcUGgCGGGCggGCUG-CUCGg -3'
miRNA:   3'- cCCGCC-----ACgGCCCGuaCGACcGAGCa -5'
12933 5' -62.8 NC_003387.1 + 1615 0.67 0.270994
Target:  5'- uGGCGauuucgGUCGGcGCGUGCUGGCUg-- -3'
miRNA:   3'- cCCGCca----CGGCC-CGUACGACCGAgca -5'
12933 5' -62.8 NC_003387.1 + 39419 0.67 0.264444
Target:  5'- uGGGUcgaGGUGaCCGGGCGccGCaaGCUCGg -3'
miRNA:   3'- -CCCG---CCAC-GGCCCGUa-CGacCGAGCa -5'
12933 5' -62.8 NC_003387.1 + 17496 0.68 0.251729
Target:  5'- cGGGCGccgcggccguaGUGCuCGGccaGCAUGCgcagcGGCUCGg -3'
miRNA:   3'- -CCCGC-----------CACG-GCC---CGUACGa----CCGAGCa -5'
12933 5' -62.8 NC_003387.1 + 24097 0.68 0.245563
Target:  5'- -uGCGGUGUCGgcaucgccuGGCAUGCgGGCgUCGg -3'
miRNA:   3'- ccCGCCACGGC---------CCGUACGaCCG-AGCa -5'
12933 5' -62.8 NC_003387.1 + 21481 0.68 0.239522
Target:  5'- -cGCGccgGUCGGGCcggGCUGGUUCGUg -3'
miRNA:   3'- ccCGCca-CGGCCCGua-CGACCGAGCA- -5'
12933 5' -62.8 NC_003387.1 + 20952 0.68 0.239522
Target:  5'- aGGGCGGgucauCCGGGCAgggGCgGGCa--- -3'
miRNA:   3'- -CCCGCCac---GGCCCGUa--CGaCCGagca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.