miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 3' -57.7 NC_003387.1 + 51570 0.67 0.469425
Target:  5'- cGCuaAGCACcGCGCAUGCacgcaGGCgCCGAg -3'
miRNA:   3'- aCGc-UUGUGuCGCGUACG-----UCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 50953 0.66 0.531531
Target:  5'- -cUGAACGcCAGCGCGaaGCGcCCCCGAg -3'
miRNA:   3'- acGCUUGU-GUCGCGUa-CGUcGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 50695 0.67 0.500051
Target:  5'- gGCGAcgGCGGcCGUcgGCGGCaCCGAg -3'
miRNA:   3'- aCGCUugUGUC-GCGuaCGUCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 50457 0.67 0.489741
Target:  5'- -uCGGGCACcucggGGCGCccacGCAGCCCCu- -3'
miRNA:   3'- acGCUUGUG-----UCGCGua--CGUCGGGGcu -5'
12957 3' -57.7 NC_003387.1 + 50364 0.66 0.516744
Target:  5'- cGCGuACGUGGCGCucgacgccgacgGCGGCCUCGAc -3'
miRNA:   3'- aCGCuUGUGUCGCGua----------CGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49679 0.72 0.246322
Target:  5'- gGuCGAGCAguGCugaGCGUGCAGCCCgGc -3'
miRNA:   3'- aC-GCUUGUguCG---CGUACGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 49593 0.73 0.194338
Target:  5'- gGCGGugGCcugGCAGUGCugccgcugGCGGCCCCGAu -3'
miRNA:   3'- aCGCU--UG---UGUCGCGua------CGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49302 0.68 0.420629
Target:  5'- cGcCGAGCACgccgAGgGCA--CGGCCCCGAg -3'
miRNA:   3'- aC-GCUUGUG----UCgCGUacGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49176 0.66 0.563698
Target:  5'- gGCGGucGCGCAG-GCG-GCGGCCgUCGAc -3'
miRNA:   3'- aCGCU--UGUGUCgCGUaCGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 48972 0.73 0.204992
Target:  5'- gGCGAucguGCACGcGgGCAUGCGGCCgUCGAu -3'
miRNA:   3'- aCGCU----UGUGU-CgCGUACGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 48844 0.73 0.216147
Target:  5'- cGCGAcGCACGGCGU--GCAcGCCCUGGu -3'
miRNA:   3'- aCGCU-UGUGUCGCGuaCGU-CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 48597 0.72 0.252761
Target:  5'- gUGUGAACGCAGCGCGgUGuCGGCCg--- -3'
miRNA:   3'- -ACGCUUGUGUCGCGU-AC-GUCGGggcu -5'
12957 3' -57.7 NC_003387.1 + 48040 0.72 0.236303
Target:  5'- gUGCGGGCACGGCaaGCAguucacccgcuaccGC-GCCCCGAa -3'
miRNA:   3'- -ACGCUUGUGUCG--CGUa-------------CGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 47972 0.66 0.542186
Target:  5'- cGCGAGCugGGCgGCAacgGCAaacgguGCUUCGAg -3'
miRNA:   3'- aCGCUUGugUCG-CGUa--CGU------CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 47801 0.66 0.562617
Target:  5'- cGCGcGACGCcGCGCcgggcaGUGCAGCuaccgcaCCCGGc -3'
miRNA:   3'- aCGC-UUGUGuCGCG------UACGUCG-------GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 47394 0.69 0.366315
Target:  5'- cGCaAGCGCGGgGCAaccgGCcccGCCCCGAg -3'
miRNA:   3'- aCGcUUGUGUCgCGUa---CGu--CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 47163 0.67 0.459429
Target:  5'- aGCGGGCAC--CGCG-GUGGCCCUGGu -3'
miRNA:   3'- aCGCUUGUGucGCGUaCGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 46819 0.66 0.552911
Target:  5'- cGCGuaaGCGGCGCaAUGCuucuGCCgCGGc -3'
miRNA:   3'- aCGCuugUGUCGCG-UACGu---CGGgGCU- -5'
12957 3' -57.7 NC_003387.1 + 46385 0.66 0.531531
Target:  5'- gGUGGGCGCAGCGUGUuGaCAGCUCa-- -3'
miRNA:   3'- aCGCUUGUGUCGCGUA-C-GUCGGGgcu -5'
12957 3' -57.7 NC_003387.1 + 45402 0.67 0.449548
Target:  5'- uUGCuuGAGCGCAGcCGaCAgguaCGGCCCCGGc -3'
miRNA:   3'- -ACG--CUUGUGUC-GC-GUac--GUCGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.