miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 5' -57.4 NC_003387.1 + 50247 0.66 0.648353
Target:  5'- gCGCCGUacgucagcgcCGG-GCGGUGCacCUCG-GCCu -3'
miRNA:   3'- -GCGGCA----------GCCgCGCUACGa-GAGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 39157 0.66 0.645132
Target:  5'- gCGCCGagggcguguacuggUCGGUGCGcgacauucgcGUGCagCUCG-ACCa -3'
miRNA:   3'- -GCGGC--------------AGCCGCGC----------UACGa-GAGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 20171 0.66 0.637614
Target:  5'- gCGUCGagGGCGCGGuugaugcgcUGCUgcgcCUCGcacgGCCg -3'
miRNA:   3'- -GCGGCagCCGCGCU---------ACGA----GAGCa---UGG- -5'
12957 5' -57.4 NC_003387.1 + 10436 0.66 0.637614
Target:  5'- gGCUGUCGGCGgGcAUcgacagcgcGCUgUCGgucGCCg -3'
miRNA:   3'- gCGGCAGCCGCgC-UA---------CGAgAGCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 25878 0.66 0.637614
Target:  5'- uGCCGagCGGCcUGGUGCUCcccggCGU-CCa -3'
miRNA:   3'- gCGGCa-GCCGcGCUACGAGa----GCAuGG- -5'
12957 5' -57.4 NC_003387.1 + 13648 0.66 0.62687
Target:  5'- -aCCGUCGGCG-GcgGCUCg-GUcGCCg -3'
miRNA:   3'- gcGGCAGCCGCgCuaCGAGagCA-UGG- -5'
12957 5' -57.4 NC_003387.1 + 12932 0.66 0.62687
Target:  5'- gGCuCGUCGGCGCucgGCa---GUGCCa -3'
miRNA:   3'- gCG-GCAGCCGCGcuaCGagagCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 30077 0.66 0.62687
Target:  5'- gGCCGcCGGgGCGAgcaUGCa---GUACCu -3'
miRNA:   3'- gCGGCaGCCgCGCU---ACGagagCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 30563 0.66 0.62687
Target:  5'- cCGCCG-CGGC-CGGUacGCgC-CGUGCCg -3'
miRNA:   3'- -GCGGCaGCCGcGCUA--CGaGaGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 23094 0.66 0.62687
Target:  5'- gCGCCGUCGcgcGUGCGGUGCaccgaCUgaUACCc -3'
miRNA:   3'- -GCGGCAGC---CGCGCUACGa----GAgcAUGG- -5'
12957 5' -57.4 NC_003387.1 + 28341 0.66 0.624721
Target:  5'- gCGCCGcuguacgUCGGCGCGAaagaUGUUCaUGUcgauggcGCCu -3'
miRNA:   3'- -GCGGC-------AGCCGCGCU----ACGAGaGCA-------UGG- -5'
12957 5' -57.4 NC_003387.1 + 44611 0.66 0.61613
Target:  5'- aCGCCGUCGGgcCGUGgcGCgagCGUgugGCCc -3'
miRNA:   3'- -GCGGCAGCC--GCGCuaCGagaGCA---UGG- -5'
12957 5' -57.4 NC_003387.1 + 8088 0.66 0.61613
Target:  5'- uGCCgGUCGGCGCcaacccgcccGAggGCgagcccagCUCGUACg -3'
miRNA:   3'- gCGG-CAGCCGCG----------CUa-CGa-------GAGCAUGg -5'
12957 5' -57.4 NC_003387.1 + 46970 0.66 0.61613
Target:  5'- aGCuCGUCGGC-CGAgGCguucagCUCGU-CCu -3'
miRNA:   3'- gCG-GCAGCCGcGCUaCGa-----GAGCAuGG- -5'
12957 5' -57.4 NC_003387.1 + 26567 0.66 0.613983
Target:  5'- aCGCCcuugCGG-GCGGUGCcgggcaugcuggCUCGUGCUg -3'
miRNA:   3'- -GCGGca--GCCgCGCUACGa-----------GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 21040 0.66 0.609692
Target:  5'- aCGCCugaccaGUCGGCGuCGAacgccgcguauaucgUGCUCUUGgGCa -3'
miRNA:   3'- -GCGG------CAGCCGC-GCU---------------ACGAGAGCaUGg -5'
12957 5' -57.4 NC_003387.1 + 13162 0.66 0.605404
Target:  5'- gGCCGUCGaG-GUcagGCUCgCGUGCCa -3'
miRNA:   3'- gCGGCAGC-CgCGcuaCGAGaGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 48914 0.66 0.605404
Target:  5'- uCGuuGUCGcGCuuGCGGUGUgcgcgUUCGUGCUc -3'
miRNA:   3'- -GCggCAGC-CG--CGCUACGa----GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 46683 0.66 0.605404
Target:  5'- uGCC--CGGCGCccUGCcgcacCUCGUGCCg -3'
miRNA:   3'- gCGGcaGCCGCGcuACGa----GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 4003 0.66 0.605404
Target:  5'- uCGUCG-CGGCGCacGGUGCUCgacaacGCCa -3'
miRNA:   3'- -GCGGCaGCCGCG--CUACGAGagca--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.