miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 5' -54.5 NC_003387.1 + 40148 0.66 0.758433
Target:  5'- aUCGgGGUaagcgUCcugcgACCGCCAGCCGCc-- -3'
miRNA:   3'- aAGUgCCAa----AG-----UGGCGGUUGGCGucc -5'
12960 5' -54.5 NC_003387.1 + 31676 0.66 0.758433
Target:  5'- -aCGCGGcgUUCGaCGCCGACUGguCAGGc -3'
miRNA:   3'- aaGUGCCa-AAGUgGCGGUUGGC--GUCC- -5'
12960 5' -54.5 NC_003387.1 + 31348 0.66 0.747979
Target:  5'- -gCGCGGgucgaacagCACCgGCCAgggcagcgucgGCUGCAGGu -3'
miRNA:   3'- aaGUGCCaaa------GUGG-CGGU-----------UGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 22340 0.66 0.737404
Target:  5'- aUCAUGGUcgugaugCGCaGCgAGCUGCAGGc -3'
miRNA:   3'- aAGUGCCAaa-----GUGgCGgUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 30598 0.66 0.737404
Target:  5'- gUCGCcgucGUaUUGCCGCCAggGCCGcCGGGg -3'
miRNA:   3'- aAGUGc---CAaAGUGGCGGU--UGGC-GUCC- -5'
12960 5' -54.5 NC_003387.1 + 25137 0.66 0.737404
Target:  5'- --aGCGGca-CACCGCgCAGCCGauCGGGg -3'
miRNA:   3'- aagUGCCaaaGUGGCG-GUUGGC--GUCC- -5'
12960 5' -54.5 NC_003387.1 + 2902 0.66 0.737404
Target:  5'- cUCGcCGGg--CGCgGCaGGCCGCGGGc -3'
miRNA:   3'- aAGU-GCCaaaGUGgCGgUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 15005 0.66 0.726721
Target:  5'- aUCAaGGUgUCGCaCaCCAACCcGCAGGg -3'
miRNA:   3'- aAGUgCCAaAGUG-GcGGUUGG-CGUCC- -5'
12960 5' -54.5 NC_003387.1 + 8632 0.66 0.726721
Target:  5'- gUUCGCGGccUCGCCGUCugaccucgaAACCGUuGGc -3'
miRNA:   3'- -AAGUGCCaaAGUGGCGG---------UUGGCGuCC- -5'
12960 5' -54.5 NC_003387.1 + 16564 0.66 0.726721
Target:  5'- --gGCGGUgagCAuCCgGCCGACCGCcucgucGGGg -3'
miRNA:   3'- aagUGCCAaa-GU-GG-CGGUUGGCG------UCC- -5'
12960 5' -54.5 NC_003387.1 + 30669 0.66 0.726721
Target:  5'- --aACGGUgccggugaUCGCCGCC-ACCGCccacGGa -3'
miRNA:   3'- aagUGCCAa-------AGUGGCGGuUGGCGu---CC- -5'
12960 5' -54.5 NC_003387.1 + 24053 0.66 0.726721
Target:  5'- aUCACGG--UCACgacgguguCGCCGACCgGCAcGGu -3'
miRNA:   3'- aAGUGCCaaAGUG--------GCGGUUGG-CGU-CC- -5'
12960 5' -54.5 NC_003387.1 + 14918 0.66 0.726721
Target:  5'- aUCGCG----CGCUGCUgcGACCGCGGGu -3'
miRNA:   3'- aAGUGCcaaaGUGGCGG--UUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 438 0.66 0.725647
Target:  5'- aUgGCGGUUaagucugUCGCCGCCGcggcgGCCGaCGGc -3'
miRNA:   3'- aAgUGCCAA-------AGUGGCGGU-----UGGC-GUCc -5'
12960 5' -54.5 NC_003387.1 + 1921 0.66 0.725647
Target:  5'- -cCGCGGUgaggUCgAUCGugcagcgcaugauCCGGCCGCGGGu -3'
miRNA:   3'- aaGUGCCAa---AG-UGGC-------------GGUUGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 1284 0.66 0.723497
Target:  5'- -gCGCGGcgUUCgACCGgCGcaguucgaggcggcGCCGCAGGc -3'
miRNA:   3'- aaGUGCCa-AAG-UGGCgGU--------------UGGCGUCC- -5'
12960 5' -54.5 NC_003387.1 + 4550 0.66 0.715942
Target:  5'- cUUGCGGgccugCGCCuGCgCGACCGCGcGGg -3'
miRNA:   3'- aAGUGCCaaa--GUGG-CG-GUUGGCGU-CC- -5'
12960 5' -54.5 NC_003387.1 + 48704 0.66 0.709433
Target:  5'- -aCGCGGUucUuuugggccuggcugaUCGCCGCCAcgGCCGCcucaauccucGGGa -3'
miRNA:   3'- aaGUGCCA--A---------------AGUGGCGGU--UGGCG----------UCC- -5'
12960 5' -54.5 NC_003387.1 + 15726 0.66 0.705077
Target:  5'- -aCGCGGaacccgCGCCGgaUCAGCCGCAGc -3'
miRNA:   3'- aaGUGCCaaa---GUGGC--GGUUGGCGUCc -5'
12960 5' -54.5 NC_003387.1 + 48430 0.67 0.69414
Target:  5'- gUCGCGGUg-CGCUGCuCGcCCGCGGc -3'
miRNA:   3'- aAGUGCCAaaGUGGCG-GUuGGCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.