Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12975 | 3' | -65.4 | NC_003387.1 | + | 12275 | 0.66 | 0.250986 |
Target: 5'- cGCCUGGCgaccggCGGCCgGAuCAGCggGCCGGg -3' miRNA: 3'- -CGGGCCGg-----GCCGGaCU-GUCG--CGGCUu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 26762 | 0.66 | 0.250986 |
Target: 5'- cCCCaGCgaUCGGCCUGGC--CGCCGAAg -3' miRNA: 3'- cGGGcCG--GGCCGGACUGucGCGGCUU- -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 4926 | 0.66 | 0.247327 |
Target: 5'- uGCCCGGCgCGGCguCgcgcguugucgaacgUGACAGaccaGCCGGu -3' miRNA: 3'- -CGGGCCGgGCCG--G---------------ACUGUCg---CGGCUu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 22993 | 0.66 | 0.244913 |
Target: 5'- cGCCCGcGUagcugccgucgUCGGCCUgGGCGcCGCCGAGc -3' miRNA: 3'- -CGGGC-CG-----------GGCCGGA-CUGUcGCGGCUU- -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 17146 | 0.66 | 0.244913 |
Target: 5'- -aCCaGCUCGGCC--AgGGCGCCGAGg -3' miRNA: 3'- cgGGcCGGGCCGGacUgUCGCGGCUU- -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 5699 | 0.66 | 0.244913 |
Target: 5'- uGCCCGGCCgGGCCgccaaUGAa---GUCGAGc -3' miRNA: 3'- -CGGGCCGGgCCGG-----ACUgucgCGGCUU- -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 40809 | 0.66 | 0.244912 |
Target: 5'- aGCCgauuucaaGGCCaaagGGCacaaGACGGCGCCGAu -3' miRNA: 3'- -CGGg-------CCGGg---CCGga--CUGUCGCGGCUu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 2032 | 0.66 | 0.244312 |
Target: 5'- cGCCgaCGGCCgccgucgccgagcUGGCCgcggUGGCGGCGCCa-- -3' miRNA: 3'- -CGG--GCCGG-------------GCCGG----ACUGUCGCGGcuu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 50261 | 0.66 | 0.238962 |
Target: 5'- cGCCgGGCggugcaccUCGGCCUGGCGcGCGUCc-- -3' miRNA: 3'- -CGGgCCG--------GGCCGGACUGU-CGCGGcuu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 15594 | 0.66 | 0.238962 |
Target: 5'- uGCCCaaccaucacGGCCCGGCC-GACgucgAGCacGUCGAGg -3' miRNA: 3'- -CGGG---------CCGGGCCGGaCUG----UCG--CGGCUU- -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 34424 | 0.66 | 0.238962 |
Target: 5'- cGCCaccGCCgCGGCCgGGuCGGCGCUGGu -3' miRNA: 3'- -CGGgc-CGG-GCCGGaCU-GUCGCGGCUu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 39762 | 0.66 | 0.238962 |
Target: 5'- cGCCCGGUaCGaGCCgc-CAGaCGCCGAc -3' miRNA: 3'- -CGGGCCGgGC-CGGacuGUC-GCGGCUu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 46235 | 0.66 | 0.238962 |
Target: 5'- uGCCuucgCGGCCCGG-UUGGucGCGCCGAc -3' miRNA: 3'- -CGG----GCCGGGCCgGACUguCGCGGCUu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 8137 | 0.66 | 0.238961 |
Target: 5'- -gCUGuCCCGGCCgGGCAGCGaCCGc- -3' miRNA: 3'- cgGGCcGGGCCGGaCUGUCGC-GGCuu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 25168 | 0.66 | 0.238961 |
Target: 5'- gGUUCGGCUCGGCgCggUGGCcccGGCGCCGc- -3' miRNA: 3'- -CGGGCCGGGCCG-G--ACUG---UCGCGGCuu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 13644 | 0.66 | 0.238961 |
Target: 5'- gGCCaccgucggcggCGGCUCGGUCgccGAgGGCGCCGu- -3' miRNA: 3'- -CGG-----------GCCGGGCCGGa--CUgUCGCGGCuu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 48198 | 0.66 | 0.233132 |
Target: 5'- uGCCC-GCaCCGGC--GGCGGCGgCCGAGg -3' miRNA: 3'- -CGGGcCG-GGCCGgaCUGUCGC-GGCUU- -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 41446 | 0.66 | 0.233132 |
Target: 5'- -aCCGGCgCGGcCCUGACGcCGCCc-- -3' miRNA: 3'- cgGGCCGgGCC-GGACUGUcGCGGcuu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 35523 | 0.66 | 0.233132 |
Target: 5'- uGCCuCGGCCuCGGCC--ACuuucGCGCCGu- -3' miRNA: 3'- -CGG-GCCGG-GCCGGacUGu---CGCGGCuu -5' |
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12975 | 3' | -65.4 | NC_003387.1 | + | 22494 | 0.66 | 0.227422 |
Target: 5'- aCCgGGCgaCGGCCUcGGCGGCGCgcuCGAc -3' miRNA: 3'- cGGgCCGg-GCCGGA-CUGUCGCG---GCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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