miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12975 5' -54.9 NC_003387.1 + 18464 0.66 0.737483
Target:  5'- aCGCCcgacucgGCgAUCAgccGGUCGAGCGCCc -3'
miRNA:   3'- -GCGGuuca---UG-UAGU---UCGGCUCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 29587 0.66 0.737483
Target:  5'- gGCCGAGggGCcg-GAGCCGGGCGaCUa -3'
miRNA:   3'- gCGGUUCa-UGuagUUCGGCUCGC-GGc -5'
12975 5' -54.9 NC_003387.1 + 30440 0.66 0.737483
Target:  5'- gGCCGAG-GCGgu-GGCCGAgcacgGCGCCc -3'
miRNA:   3'- gCGGUUCaUGUaguUCGGCU-----CGCGGc -5'
12975 5' -54.9 NC_003387.1 + 32704 0.66 0.737483
Target:  5'- aGCCAgcaccGGaaUACGUgAGGUCGAacgGCGCCGc -3'
miRNA:   3'- gCGGU-----UC--AUGUAgUUCGGCU---CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 40348 0.66 0.737483
Target:  5'- aGCC--GUGCAgCAGGCCGugaucGCgGCCGg -3'
miRNA:   3'- gCGGuuCAUGUaGUUCGGCu----CG-CGGC- -5'
12975 5' -54.9 NC_003387.1 + 8175 0.66 0.737483
Target:  5'- aGCCcuugAAGUcuuUCGAGCCcugcGGCGCCGg -3'
miRNA:   3'- gCGG----UUCAuguAGUUCGGc---UCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 1514 0.66 0.737483
Target:  5'- gGCCGAcGUGCAggcucagcaccUCGGuGCCGAGgauCGCCa -3'
miRNA:   3'- gCGGUU-CAUGU-----------AGUU-CGGCUC---GCGGc -5'
12975 5' -54.9 NC_003387.1 + 4905 0.66 0.736424
Target:  5'- uGCCGGGUGCGgu-AGCUGcacugcccggcgcGGCGUCGc -3'
miRNA:   3'- gCGGUUCAUGUaguUCGGC-------------UCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 22248 0.66 0.736424
Target:  5'- gCGCCGacgggaagcacuuGGUGCA-C-AGCaGGGCGCCGu -3'
miRNA:   3'- -GCGGU-------------UCAUGUaGuUCGgCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 21492 0.66 0.734303
Target:  5'- gGCCGGGcugguucgugucgcUGCA-CGAGCCGGccgcuGCGCUGa -3'
miRNA:   3'- gCGGUUC--------------AUGUaGUUCGGCU-----CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 51320 0.66 0.731114
Target:  5'- gCGCCucGcACAacuUCGAgcgcgaccccgacccGCUGAGCGCCGa -3'
miRNA:   3'- -GCGGuuCaUGU---AGUU---------------CGGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 35224 0.66 0.726847
Target:  5'- gGCCGAGcACuac-GGCCGcGGCGCCc -3'
miRNA:   3'- gCGGUUCaUGuaguUCGGC-UCGCGGc -5'
12975 5' -54.9 NC_003387.1 + 22969 0.66 0.726847
Target:  5'- gCGCCccGGU-CAUCGuGUCGggcGGCGCCGa -3'
miRNA:   3'- -GCGGu-UCAuGUAGUuCGGC---UCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 29978 0.66 0.726847
Target:  5'- gGCCGAGgc---CAAGgCGAGCGaCCGc -3'
miRNA:   3'- gCGGUUCauguaGUUCgGCUCGC-GGC- -5'
12975 5' -54.9 NC_003387.1 + 32467 0.66 0.726847
Target:  5'- gCGCCAugcGGgcguuUGCGUCGAcCCcGGCGCCGu -3'
miRNA:   3'- -GCGGU---UC-----AUGUAGUUcGGcUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 17277 0.66 0.726847
Target:  5'- gCGCgCucGUccaACGUCuuuAGCCGGGUGUCGa -3'
miRNA:   3'- -GCG-GuuCA---UGUAGu--UCGGCUCGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 11806 0.66 0.726847
Target:  5'- uCGUCGAGUGguUCAAGaacaCGGccGUGCCGu -3'
miRNA:   3'- -GCGGUUCAUguAGUUCg---GCU--CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 28129 0.66 0.716115
Target:  5'- uCGCCGAGgcCcgCAAGCgccccacgauCGAGC-CCGg -3'
miRNA:   3'- -GCGGUUCauGuaGUUCG----------GCUCGcGGC- -5'
12975 5' -54.9 NC_003387.1 + 21577 0.66 0.716115
Target:  5'- gGCCcAGgcgcgcgGCAUCAgcgaGGCCGAcgcgGCGCUGc -3'
miRNA:   3'- gCGGuUCa------UGUAGU----UCGGCU----CGCGGC- -5'
12975 5' -54.9 NC_003387.1 + 9531 0.66 0.716115
Target:  5'- cCGUCAagcGGUGCcugcgCAAGCCGc-CGCCGg -3'
miRNA:   3'- -GCGGU---UCAUGua---GUUCGGCucGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.