miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12988 5' -64.9 NC_003387.1 + 46810 0.66 0.283316
Target:  5'- aGCCCCCGgCgcguaaGCGGCGCAaugcuucuGCCgCGGc- -3'
miRNA:   3'- -CGGGGGUgGa-----CGCCGCGU--------CGG-GCUcc -5'
12988 5' -64.9 NC_003387.1 + 44434 0.66 0.283316
Target:  5'- uGCUgCCCGCCgacGCgcacgaGGCGCuGCgCGAGGc -3'
miRNA:   3'- -CGG-GGGUGGa--CG------CCGCGuCGgGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 24280 0.66 0.283316
Target:  5'- uGCCgCCGCCU-CGGCGUGcGCgCCGAu- -3'
miRNA:   3'- -CGGgGGUGGAcGCCGCGU-CG-GGCUcc -5'
12988 5' -64.9 NC_003387.1 + 3663 0.66 0.283316
Target:  5'- uGCCCCgGCUgaGCGGCcugaccgAGgCCGAGGg -3'
miRNA:   3'- -CGGGGgUGGa-CGCCGcg-----UCgGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 48073 0.66 0.283316
Target:  5'- cGCCCCgaagCGCCUcgacggGUGGCGCugccgcugcGCCCGcGGu -3'
miRNA:   3'- -CGGGG----GUGGA------CGCCGCGu--------CGGGCuCC- -5'
12988 5' -64.9 NC_003387.1 + 27533 0.66 0.283316
Target:  5'- -gCgCUGCC-GCGGCgGCGGCgCCGGGGc -3'
miRNA:   3'- cgGgGGUGGaCGCCG-CGUCG-GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 20453 0.66 0.283316
Target:  5'- cGCCCCCacgccuugucgGCCU-CGGCGaCGGCCaGGcGGu -3'
miRNA:   3'- -CGGGGG-----------UGGAcGCCGC-GUCGGgCU-CC- -5'
12988 5' -64.9 NC_003387.1 + 51403 0.66 0.282646
Target:  5'- gGCCggugaCCggcgagcGCCUGCGGCGCcGCCuCGAa- -3'
miRNA:   3'- -CGGg----GG-------UGGACGCCGCGuCGG-GCUcc -5'
12988 5' -64.9 NC_003387.1 + 28879 0.66 0.281312
Target:  5'- gGCCCCgACUgcgGCggcuuaGGCGCGggcgccgggccaccGCCCGAGc -3'
miRNA:   3'- -CGGGGgUGGa--CG------CCGCGU--------------CGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 42821 0.66 0.276679
Target:  5'- aGCCCCgACg-GCGGCgaggcgaucaugGCGGCgaUCGAGGu -3'
miRNA:   3'- -CGGGGgUGgaCGCCG------------CGUCG--GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 17175 0.66 0.270168
Target:  5'- gGUgCgCCGCCUggGCGGCGaCGGCgcgaaaguggCCGAGGc -3'
miRNA:   3'- -CGgG-GGUGGA--CGCCGC-GUCG----------GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 34625 0.66 0.26378
Target:  5'- gGCCgCCUACCU---GCGCAGCCuCGGGc -3'
miRNA:   3'- -CGG-GGGUGGAcgcCGCGUCGG-GCUCc -5'
12988 5' -64.9 NC_003387.1 + 50782 0.66 0.257515
Target:  5'- aGCCCCaacCGCCUGCGuCGCGGaUCGGGc -3'
miRNA:   3'- -CGGGG---GUGGACGCcGCGUCgGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 19892 0.66 0.257515
Target:  5'- -gCCCCGCCccGCGGUGCGggcuGCgCUGAGa -3'
miRNA:   3'- cgGGGGUGGa-CGCCGCGU----CG-GGCUCc -5'
12988 5' -64.9 NC_003387.1 + 638 0.66 0.257515
Target:  5'- cGUCgCCGCC-GCGGCaGCGacGCCCGAu- -3'
miRNA:   3'- -CGGgGGUGGaCGCCG-CGU--CGGGCUcc -5'
12988 5' -64.9 NC_003387.1 + 48245 0.67 0.251373
Target:  5'- cGCCCgguCgGCC-GCGGCcaGCAGCUCGGGc -3'
miRNA:   3'- -CGGG---GgUGGaCGCCG--CGUCGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 8907 0.67 0.245351
Target:  5'- cGCCCUCGCCgaucGUGCAGCacucgUCGAGGa -3'
miRNA:   3'- -CGGGGGUGGacgcCGCGUCG-----GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 21788 0.67 0.245351
Target:  5'- gGCgCaCgAUCUGCgacggcccGGUGCAGCCCGAcGGg -3'
miRNA:   3'- -CGgG-GgUGGACG--------CCGCGUCGGGCU-CC- -5'
12988 5' -64.9 NC_003387.1 + 37340 0.67 0.245351
Target:  5'- aGCCCCCGCC-GCGGgcugcgcuaucUGCGGCaCCugucGGGc -3'
miRNA:   3'- -CGGGGGUGGaCGCC-----------GCGUCG-GGc---UCC- -5'
12988 5' -64.9 NC_003387.1 + 46309 0.67 0.23945
Target:  5'- gGCCCgcagUCACC-GCGGCcggaauCAGCgCCGGGGa -3'
miRNA:   3'- -CGGG----GGUGGaCGCCGc-----GUCG-GGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.