miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12988 5' -64.9 NC_003387.1 + 44203 0.68 0.19642
Target:  5'- --aCCCGCgaGcCGGU-CGGCCCGAGGg -3'
miRNA:   3'- cggGGGUGgaC-GCCGcGUCGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 7732 0.67 0.227444
Target:  5'- uGCCUcacagcaCCGCCUcgGCGGCagcggcgaucGCGGCCUGAGc -3'
miRNA:   3'- -CGGG-------GGUGGA--CGCCG----------CGUCGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 43504 0.67 0.222457
Target:  5'- cGCCCCCACCaggaaagcgcGCGG-GguGCCggucugUGAGGu -3'
miRNA:   3'- -CGGGGGUGGa---------CGCCgCguCGG------GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 25932 0.67 0.222457
Target:  5'- cGCCCCaCACCcacaUGCuGCGguGCCUucGGc -3'
miRNA:   3'- -CGGGG-GUGG----ACGcCGCguCGGGcuCC- -5'
12988 5' -64.9 NC_003387.1 + 43826 0.67 0.222457
Target:  5'- uGCCCUCGCCgaaaaugGCGGCGUucacCUCGGGc -3'
miRNA:   3'- -CGGGGGUGGa------CGCCGCGuc--GGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 6012 0.67 0.222457
Target:  5'- uCgCCCGCCUGCuuGGCGUccAGCggcaCGAGGu -3'
miRNA:   3'- cGgGGGUGGACG--CCGCG--UCGg---GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 982 0.67 0.222457
Target:  5'- uGCCgCCGCCga-GGCGCcGaCCGGGGu -3'
miRNA:   3'- -CGGgGGUGGacgCCGCGuCgGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 41036 0.68 0.211706
Target:  5'- aGCCCgaCgACC-GCGGCGauaauCAGCCCGAucGGg -3'
miRNA:   3'- -CGGG--GgUGGaCGCCGC-----GUCGGGCU--CC- -5'
12988 5' -64.9 NC_003387.1 + 4556 0.68 0.2065
Target:  5'- gGCCUgCGCCUGCGcgaccGCGCGGgCCucGGu -3'
miRNA:   3'- -CGGGgGUGGACGC-----CGCGUCgGGcuCC- -5'
12988 5' -64.9 NC_003387.1 + 5338 0.67 0.228004
Target:  5'- uGCCCCgCGCUUGCGGUGuCGGUgUUGAGc -3'
miRNA:   3'- -CGGGG-GUGGACGCCGC-GUCG-GGCUCc -5'
12988 5' -64.9 NC_003387.1 + 47595 0.67 0.228004
Target:  5'- cGCCCCUcgucGCgUGCGGCGauCAGCUCGc-- -3'
miRNA:   3'- -CGGGGG----UGgACGCCGC--GUCGGGCucc -5'
12988 5' -64.9 NC_003387.1 + 48453 0.67 0.235967
Target:  5'- gGCCUCCAUCgcccgcgaaaucucuUGCGGCGUAGU--GAGGc -3'
miRNA:   3'- -CGGGGGUGG---------------ACGCCGCGUCGggCUCC- -5'
12988 5' -64.9 NC_003387.1 + 46810 0.66 0.283316
Target:  5'- aGCCCCCGgCgcguaaGCGGCGCAaugcuucuGCCgCGGc- -3'
miRNA:   3'- -CGGGGGUgGa-----CGCCGCGU--------CGG-GCUcc -5'
12988 5' -64.9 NC_003387.1 + 27533 0.66 0.283316
Target:  5'- -gCgCUGCC-GCGGCgGCGGCgCCGGGGc -3'
miRNA:   3'- cgGgGGUGGaCGCCG-CGUCG-GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 28879 0.66 0.281312
Target:  5'- gGCCCCgACUgcgGCggcuuaGGCGCGggcgccgggccaccGCCCGAGc -3'
miRNA:   3'- -CGGGGgUGGa--CG------CCGCGU--------------CGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 19892 0.66 0.257515
Target:  5'- -gCCCCGCCccGCGGUGCGggcuGCgCUGAGa -3'
miRNA:   3'- cgGGGGUGGa-CGCCGCGU----CG-GGCUCc -5'
12988 5' -64.9 NC_003387.1 + 50782 0.66 0.257515
Target:  5'- aGCCCCaacCGCCUGCGuCGCGGaUCGGGc -3'
miRNA:   3'- -CGGGG---GUGGACGCcGCGUCgGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 8907 0.67 0.245351
Target:  5'- cGCCCUCGCCgaucGUGCAGCacucgUCGAGGa -3'
miRNA:   3'- -CGGGGGUGGacgcCGCGUCG-----GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 21788 0.67 0.245351
Target:  5'- gGCgCaCgAUCUGCgacggcccGGUGCAGCCCGAcGGg -3'
miRNA:   3'- -CGgG-GgUGGACG--------CCGCGUCGGGCU-CC- -5'
12988 5' -64.9 NC_003387.1 + 46309 0.67 0.23945
Target:  5'- gGCCCgcagUCACC-GCGGCcggaauCAGCgCCGGGGa -3'
miRNA:   3'- -CGGG----GGUGGaCGCCGc-----GUCG-GGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.