miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12991 5' -59.7 NC_003387.1 + 20785 0.65 0.485834
Target:  5'- uGCgACCGGCGCGGaucuGCUCGguGAGccaccgcUCGg -3'
miRNA:   3'- cUG-UGGCCGCGUC----CGGGCguCUU-------AGC- -5'
12991 5' -59.7 NC_003387.1 + 959 0.66 0.476871
Target:  5'- cGCACCGGaccCGCAcGGCC-GCAGAGa-- -3'
miRNA:   3'- cUGUGGCC---GCGU-CCGGgCGUCUUagc -5'
12991 5' -59.7 NC_003387.1 + 12365 0.66 0.476871
Target:  5'- aACGCCGcCGCGacGGCCCGCA--AUCu -3'
miRNA:   3'- cUGUGGCcGCGU--CCGGGCGUcuUAGc -5'
12991 5' -59.7 NC_003387.1 + 32727 0.66 0.476871
Target:  5'- cGGCGCaCGGCGCGguGGCCUcgGC-GAuUCGg -3'
miRNA:   3'- -CUGUG-GCCGCGU--CCGGG--CGuCUuAGC- -5'
12991 5' -59.7 NC_003387.1 + 38608 0.66 0.476871
Target:  5'- gGugAUCgaGGCGCuguucGGCCCGCAGGccgCGc -3'
miRNA:   3'- -CugUGG--CCGCGu----CCGGGCGUCUua-GC- -5'
12991 5' -59.7 NC_003387.1 + 1411 0.66 0.46701
Target:  5'- cGCACCGGaCGUcGGCCCG-AGcGAUCc -3'
miRNA:   3'- cUGUGGCC-GCGuCCGGGCgUC-UUAGc -5'
12991 5' -59.7 NC_003387.1 + 23412 0.66 0.46701
Target:  5'- cGGC-CUGGCGCucguGCCCGCGG--UCGc -3'
miRNA:   3'- -CUGuGGCCGCGuc--CGGGCGUCuuAGC- -5'
12991 5' -59.7 NC_003387.1 + 48107 0.66 0.46701
Target:  5'- uGCGCCcGCGguGGCUCGCc-GAUCa -3'
miRNA:   3'- cUGUGGcCGCguCCGGGCGucUUAGc -5'
12991 5' -59.7 NC_003387.1 + 31949 0.66 0.457255
Target:  5'- cGCGCCGGuCGCAuccccGGCC-GCAaGGUCGg -3'
miRNA:   3'- cUGUGGCC-GCGU-----CCGGgCGUcUUAGC- -5'
12991 5' -59.7 NC_003387.1 + 40552 0.66 0.457255
Target:  5'- cGugACCcccgaGGCGUucgAGGCgCUGCAGAAgcUCGg -3'
miRNA:   3'- -CugUGG-----CCGCG---UCCG-GGCGUCUU--AGC- -5'
12991 5' -59.7 NC_003387.1 + 12614 0.66 0.457255
Target:  5'- cGACGCCGGgcCGCc-GCCUGCgaGGAAUCc -3'
miRNA:   3'- -CUGUGGCC--GCGucCGGGCG--UCUUAGc -5'
12991 5' -59.7 NC_003387.1 + 30147 0.66 0.457255
Target:  5'- cGCACCgaGGCcacccucgacCAGGCCCGCGcGAUCGc -3'
miRNA:   3'- cUGUGG--CCGc---------GUCCGGGCGUcUUAGC- -5'
12991 5' -59.7 NC_003387.1 + 3323 0.66 0.456285
Target:  5'- uGCugUGGCGUgacaccgAGGCCCGCucguuuGGcgCGg -3'
miRNA:   3'- cUGugGCCGCG-------UCCGGGCGu-----CUuaGC- -5'
12991 5' -59.7 NC_003387.1 + 29471 0.66 0.456285
Target:  5'- cGGCGCCaGCgagcaggGCAcGGCCCGCgAGAugggcGUCGa -3'
miRNA:   3'- -CUGUGGcCG-------CGU-CCGGGCG-UCU-----UAGC- -5'
12991 5' -59.7 NC_003387.1 + 16651 0.66 0.44761
Target:  5'- uGCGCCucggGGUGCAGGCUCuugaGCAGcuuuuGAUCGa -3'
miRNA:   3'- cUGUGG----CCGCGUCCGGG----CGUC-----UUAGC- -5'
12991 5' -59.7 NC_003387.1 + 21804 0.66 0.438079
Target:  5'- cGGC-CCGGUGCA-GCCCGaCGGGAg-- -3'
miRNA:   3'- -CUGuGGCCGCGUcCGGGC-GUCUUagc -5'
12991 5' -59.7 NC_003387.1 + 45134 0.66 0.438079
Target:  5'- uGACGCauuucgaGGCGCGGcGCUCGgAGGugGUCGc -3'
miRNA:   3'- -CUGUGg------CCGCGUC-CGGGCgUCU--UAGC- -5'
12991 5' -59.7 NC_003387.1 + 44743 0.66 0.438079
Target:  5'- gGGCGCCGaaGCGCAGcacgccGCCCGCcguGAAgCGg -3'
miRNA:   3'- -CUGUGGC--CGCGUC------CGGGCGu--CUUaGC- -5'
12991 5' -59.7 NC_003387.1 + 33802 0.67 0.428666
Target:  5'- cGACACCcgaugaGGCGCAGGgcauCCCGCuGGGc-- -3'
miRNA:   3'- -CUGUGG------CCGCGUCC----GGGCGuCUUagc -5'
12991 5' -59.7 NC_003387.1 + 7274 0.67 0.428666
Target:  5'- uGGCuccaCGGCGCAGGCCCgGC-GAGc-- -3'
miRNA:   3'- -CUGug--GCCGCGUCCGGG-CGuCUUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.