miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12992 5' -60.9 NC_003387.1 + 21106 0.67 0.324064
Target:  5'- aGGGCGGUGCGGUcacgaaUACCGaGgCgGGCc -3'
miRNA:   3'- -CCCGUCACGUCG------AUGGCgUgGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 36036 0.67 0.356041
Target:  5'- uGGGCGuGUucucgucguaauGCAGCUugaucGCCGaCACCUGGUc -3'
miRNA:   3'- -CCCGU-CA------------CGUCGA-----UGGC-GUGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 12199 0.67 0.356041
Target:  5'- cGGGCAG-GUcGCUGCUcgGUGCCgGGCc -3'
miRNA:   3'- -CCCGUCaCGuCGAUGG--CGUGGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 7844 0.67 0.347843
Target:  5'- cGGCGGcUGCgucAGCUcgGCCaGCACCuugCGGCAg -3'
miRNA:   3'- cCCGUC-ACG---UCGA--UGG-CGUGG---GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 3838 0.67 0.347843
Target:  5'- aGGGCGGcgcgguagGCGGC-GCCGacgAUCCGGCu -3'
miRNA:   3'- -CCCGUCa-------CGUCGaUGGCg--UGGGCCGu -5'
12992 5' -60.9 NC_003387.1 + 48427 0.67 0.33978
Target:  5'- cGGGUcgcGGUGC-GCUGCuCGC-CCgCGGCc -3'
miRNA:   3'- -CCCG---UCACGuCGAUG-GCGuGG-GCCGu -5'
12992 5' -60.9 NC_003387.1 + 8264 0.67 0.335007
Target:  5'- cGGGC-GUGCAGCgccUCGCGCagcgccucgugcgcgUCGGCGg -3'
miRNA:   3'- -CCCGuCACGUCGau-GGCGUG---------------GGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 20223 0.67 0.331853
Target:  5'- -cGCAGcgGCAGUcgUCGCACCaCGGCGc -3'
miRNA:   3'- ccCGUCa-CGUCGauGGCGUGG-GCCGU- -5'
12992 5' -60.9 NC_003387.1 + 17084 0.67 0.331853
Target:  5'- cGGcCAGUGCccGCccgGCCGC-CUCGGCGg -3'
miRNA:   3'- cCC-GUCACGu-CGa--UGGCGuGGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 7338 0.66 0.364375
Target:  5'- cGGGCGGccgggcGCAGCUaACCGC---CGGCAa -3'
miRNA:   3'- -CCCGUCa-----CGUCGA-UGGCGuggGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 27977 0.66 0.364375
Target:  5'- uGGcCGGUGCcGUUGCgGCGCCCucgauuucGGCGa -3'
miRNA:   3'- cCC-GUCACGuCGAUGgCGUGGG--------CCGU- -5'
12992 5' -60.9 NC_003387.1 + 964 0.66 0.364375
Target:  5'- cGGGCGG-GUAGUuguguaUGCCGCcGCCgaGGCGc -3'
miRNA:   3'- -CCCGUCaCGUCG------AUGGCG-UGGg-CCGU- -5'
12992 5' -60.9 NC_003387.1 + 25562 0.66 0.408024
Target:  5'- gGGGCA--GCAGCUucgcgaCGCGCUCGGa- -3'
miRNA:   3'- -CCCGUcaCGUCGAug----GCGUGGGCCgu -5'
12992 5' -60.9 NC_003387.1 + 35863 0.66 0.399035
Target:  5'- uGGGC-GUGCGGCgccaucuCCuCGCgCGGCGu -3'
miRNA:   3'- -CCCGuCACGUCGau-----GGcGUGgGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 20178 0.66 0.399035
Target:  5'- gGGcGCGGUugauGC-GCUGCUGCGCCUcGCAc -3'
miRNA:   3'- -CC-CGUCA----CGuCGAUGGCGUGGGcCGU- -5'
12992 5' -60.9 NC_003387.1 + 33954 0.66 0.387541
Target:  5'- cGGCAGcuUGCcggggucggguaugAGCUGCCGCAgCgGGUc -3'
miRNA:   3'- cCCGUC--ACG--------------UCGAUGGCGUgGgCCGu -5'
12992 5' -60.9 NC_003387.1 + 20924 0.66 0.381442
Target:  5'- cGGcGCGGUGCAGUUuuCUGCACUuucUGGUu -3'
miRNA:   3'- -CC-CGUCACGUCGAu-GGCGUGG---GCCGu -5'
12992 5' -60.9 NC_003387.1 + 8709 0.66 0.381442
Target:  5'- aGGGUgaGGUGCuGUcACCGuUugCUGGCAg -3'
miRNA:   3'- -CCCG--UCACGuCGaUGGC-GugGGCCGU- -5'
12992 5' -60.9 NC_003387.1 + 15264 0.66 0.372842
Target:  5'- uGGCGGcGCAGC-GCCGCcaGCauGGCAa -3'
miRNA:   3'- cCCGUCaCGUCGaUGGCG--UGggCCGU- -5'
12992 5' -60.9 NC_003387.1 + 26041 0.66 0.372842
Target:  5'- -aGCAGcGCgAGCUGCacgaaacgcaGCACCCGGUu -3'
miRNA:   3'- ccCGUCaCG-UCGAUGg---------CGUGGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.