miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 3' -60.2 NC_003387.1 + 39706 0.66 0.467435
Target:  5'- gACGUG-CGGGCGcu-GUCGACcuuGCCCGa -3'
miRNA:   3'- -UGCACgGUCCGCacgUAGCUG---CGGGC- -5'
12993 3' -60.2 NC_003387.1 + 19453 0.66 0.467435
Target:  5'- cCGUGCgGGcGCGUGUcaguGUgGGCGCCg- -3'
miRNA:   3'- uGCACGgUC-CGCACG----UAgCUGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 4210 0.66 0.466462
Target:  5'- cGCGUGucggcCCAGGacuggucgaaaauCGuUGCGUCGGCGCCg- -3'
miRNA:   3'- -UGCAC-----GGUCC-------------GC-ACGUAGCUGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 5983 0.66 0.457749
Target:  5'- cCG-GCCGGuugccgcCGUGCAUCGuccacuCGCCCGc -3'
miRNA:   3'- uGCaCGGUCc------GCACGUAGCu-----GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 3882 0.66 0.457749
Target:  5'- gGCGUGCacgcCGUGCGUCG-CGCCg- -3'
miRNA:   3'- -UGCACGguccGCACGUAGCuGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 44920 0.66 0.457749
Target:  5'- cGCGUcGCCGGGCugggGCGacgaGGCGCUCGc -3'
miRNA:   3'- -UGCA-CGGUCCGca--CGUag--CUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 29323 0.66 0.456786
Target:  5'- cGCGcuUGUCGGGCaUGUucagcucGUCGGCGaCCCGa -3'
miRNA:   3'- -UGC--ACGGUCCGcACG-------UAGCUGC-GGGC- -5'
12993 3' -60.2 NC_003387.1 + 29268 0.66 0.448171
Target:  5'- uACGagGCgAuGGCaacccGCAUCGACGCCCu -3'
miRNA:   3'- -UGCa-CGgU-CCGca---CGUAGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 12227 0.66 0.448171
Target:  5'- gGCGUGCCccggcguggcgAGaGCGUGCAccCGAU-CCCGa -3'
miRNA:   3'- -UGCACGG-----------UC-CGCACGUa-GCUGcGGGC- -5'
12993 3' -60.2 NC_003387.1 + 34109 0.66 0.448171
Target:  5'- gGCG-GCagaucGGCG-GCGUCGACGUCgCGg -3'
miRNA:   3'- -UGCaCGgu---CCGCaCGUAGCUGCGG-GC- -5'
12993 3' -60.2 NC_003387.1 + 26254 0.66 0.445319
Target:  5'- cCGUGCUgauggucagcauGGGCGUGC-UCGACcgcaacgucgcaauGCUCGg -3'
miRNA:   3'- uGCACGG------------UCCGCACGuAGCUG--------------CGGGC- -5'
12993 3' -60.2 NC_003387.1 + 49176 0.66 0.438705
Target:  5'- gGCGgucGCgCAGGCGgcgGcCGUCGACguugcugaGCCCGc -3'
miRNA:   3'- -UGCa--CG-GUCCGCa--C-GUAGCUG--------CGGGC- -5'
12993 3' -60.2 NC_003387.1 + 47031 0.66 0.438705
Target:  5'- gGCGgcccgGCCGGGCaugagGCGU-GGCGCUCGu -3'
miRNA:   3'- -UGCa----CGGUCCGca---CGUAgCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 47244 0.66 0.438705
Target:  5'- -gGUGCCGGGCGacuUGaa-CGAucUGCCCGa -3'
miRNA:   3'- ugCACGGUCCGC---ACguaGCU--GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 49236 0.66 0.438705
Target:  5'- gGCG-GCCGaGCGgcUGC-UCGACGCCgGg -3'
miRNA:   3'- -UGCaCGGUcCGC--ACGuAGCUGCGGgC- -5'
12993 3' -60.2 NC_003387.1 + 31217 0.66 0.438705
Target:  5'- aGCG-GCCGGcuCGUGCAgCGACacgaaccaGCCCGg -3'
miRNA:   3'- -UGCaCGGUCc-GCACGUaGCUG--------CGGGC- -5'
12993 3' -60.2 NC_003387.1 + 50253 0.66 0.438705
Target:  5'- uACGUcagcGCCGGGCgGUGCAccUCGgccuggcgcGCGUCCa -3'
miRNA:   3'- -UGCA----CGGUCCG-CACGU--AGC---------UGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 37437 0.66 0.438705
Target:  5'- -gGUGCCGGuGuCGUGCAacaucuccUCGGCGUcgaCCGa -3'
miRNA:   3'- ugCACGGUC-C-GCACGU--------AGCUGCG---GGC- -5'
12993 3' -60.2 NC_003387.1 + 7273 0.66 0.429355
Target:  5'- gACGgGUUcGGCGUGaCGUUcACGCCCGg -3'
miRNA:   3'- -UGCaCGGuCCGCAC-GUAGcUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 44524 0.66 0.429355
Target:  5'- uCGUGCCGGGCc-GCc-CGGCGCCg- -3'
miRNA:   3'- uGCACGGUCCGcaCGuaGCUGCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.