miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 5' -56.3 NC_003387.1 + 33374 0.66 0.666026
Target:  5'- aCC-AGAGCCCGCCcgGCcagguuCUCGCCg -3'
miRNA:   3'- gGGuUUUCGGGCGG--CGauu---GGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 13433 0.66 0.666026
Target:  5'- gCCGGGGGCuuGCCgucgucgagcaGCUuGCCCAgCUc -3'
miRNA:   3'- gGGUUUUCGggCGG-----------CGAuUGGGUgGA- -5'
12993 5' -56.3 NC_003387.1 + 1317 0.66 0.666026
Target:  5'- gCCgCAGgcGCUCGCCGgUcACCgGCCg -3'
miRNA:   3'- -GG-GUUuuCGGGCGGCgAuUGGgUGGa -5'
12993 5' -56.3 NC_003387.1 + 37647 0.66 0.666026
Target:  5'- cUCCAAcAGCgUCGCCGUcacGACCaCGCCa -3'
miRNA:   3'- -GGGUUuUCG-GGCGGCGa--UUGG-GUGGa -5'
12993 5' -56.3 NC_003387.1 + 5981 0.66 0.659461
Target:  5'- aCCCGGccGGUugCCGCCGUgcaucguccacucGCCCGCCUg -3'
miRNA:   3'- -GGGUUu-UCG--GGCGGCGau-----------UGGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 17819 0.66 0.655079
Target:  5'- uUCGAGAuuGCCCGCCuugGugCCGCCg -3'
miRNA:   3'- gGGUUUU--CGGGCGGcgaUugGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 17732 0.66 0.655079
Target:  5'- cCCCGGcccGGCCgGgCCGCcaggGGCCaCACCg -3'
miRNA:   3'- -GGGUUu--UCGGgC-GGCGa---UUGG-GUGGa -5'
12993 5' -56.3 NC_003387.1 + 48347 0.66 0.655079
Target:  5'- aUCAGGAGCaCCugGCCGCcgAGCgCGCCa -3'
miRNA:   3'- gGGUUUUCG-GG--CGGCGa-UUGgGUGGa -5'
12993 5' -56.3 NC_003387.1 + 42472 0.66 0.644112
Target:  5'- aCCuuGAGCCCG-CGCUcggcgcGGCUCAUCg -3'
miRNA:   3'- gGGuuUUCGGGCgGCGA------UUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 43942 0.66 0.644112
Target:  5'- aUCAGGucGCCCGCCGCcgcacggcgaaGGCCCGCa- -3'
miRNA:   3'- gGGUUUu-CGGGCGGCGa----------UUGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 15199 0.66 0.644112
Target:  5'- gCCCGc--GCCCgGCCGCUcAUUCGCUUg -3'
miRNA:   3'- -GGGUuuuCGGG-CGGCGAuUGGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 32317 0.66 0.643015
Target:  5'- aCCCGAu-GCCCgacauggaccgcuGCgGCUGAUcgCCGCCUa -3'
miRNA:   3'- -GGGUUuuCGGG-------------CGgCGAUUG--GGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 38551 0.66 0.633134
Target:  5'- gCCCucacGCCCGCgGCccGGCCCGgCg -3'
miRNA:   3'- -GGGuuuuCGGGCGgCGa-UUGGGUgGa -5'
12993 5' -56.3 NC_003387.1 + 14913 0.66 0.633134
Target:  5'- gCCCGAucGCgCGCUGCUGcgaCCGCg- -3'
miRNA:   3'- -GGGUUuuCGgGCGGCGAUug-GGUGga -5'
12993 5' -56.3 NC_003387.1 + 12359 0.66 0.622155
Target:  5'- gCCCuu-GGCCCcgGCCGCgaucacGGCCUGCUg -3'
miRNA:   3'- -GGGuuuUCGGG--CGGCGa-----UUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 7886 0.66 0.622155
Target:  5'- aCCUuGAGGUCgGCCGCacucguGCCCGCg- -3'
miRNA:   3'- -GGGuUUUCGGgCGGCGau----UGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 21394 0.66 0.622155
Target:  5'- gCCAAGAGCCuUGCCGCaGugCUugGCUa -3'
miRNA:   3'- gGGUUUUCGG-GCGGCGaUugGG--UGGa -5'
12993 5' -56.3 NC_003387.1 + 22612 0.67 0.600233
Target:  5'- gCUCA--GGCCCuuGCgGCgguACCCGCCg -3'
miRNA:   3'- -GGGUuuUCGGG--CGgCGau-UGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 35354 0.67 0.600233
Target:  5'- gCCGAgacAGGCUCGCCGC--ACCUgaucGCCg -3'
miRNA:   3'- gGGUU---UUCGGGCGGCGauUGGG----UGGa -5'
12993 5' -56.3 NC_003387.1 + 7206 0.67 0.600233
Target:  5'- gUCAAugguGGCCgCGgUGCUGACCCgGCCg -3'
miRNA:   3'- gGGUUu---UCGG-GCgGCGAUUGGG-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.