miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 5' -55.6 NC_003387.1 + 4061 0.66 0.713016
Target:  5'- aCGCCUcGGUCACGGcgugcggguUCuGCCGcaugcuCGCGa -3'
miRNA:   3'- -GCGGA-CCAGUGCU---------AG-CGGCaau---GCGU- -5'
12997 5' -55.6 NC_003387.1 + 10588 0.66 0.710879
Target:  5'- uCGCUUGGcaaugaggccagCACGGUCGCCucgGUcAUGCAg -3'
miRNA:   3'- -GCGGACCa-----------GUGCUAGCGG---CAaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 29807 0.66 0.702301
Target:  5'- gCGCCgcuaauuucGGUCGCGuUgGCCGUcGCGUc -3'
miRNA:   3'- -GCGGa--------CCAGUGCuAgCGGCAaUGCGu -5'
12997 5' -55.6 NC_003387.1 + 23360 0.66 0.691518
Target:  5'- gCGCCgcugacGGUCA-GGUCGCCGaggaugaaGCGCGc -3'
miRNA:   3'- -GCGGa-----CCAGUgCUAGCGGCaa------UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 335 0.66 0.691518
Target:  5'- gGCCUGGUaguCGAuuggcUCGCCGcaaACGUg -3'
miRNA:   3'- gCGGACCAgu-GCU-----AGCGGCaa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 25509 0.66 0.691518
Target:  5'- gGCCgGGUCGaccgcaGAcuugCGCCGgUUGCGCu -3'
miRNA:   3'- gCGGaCCAGUg-----CUa---GCGGC-AAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 48718 0.66 0.691518
Target:  5'- gGCCUGG-C-UGAUCGCCGccACGg- -3'
miRNA:   3'- gCGGACCaGuGCUAGCGGCaaUGCgu -5'
12997 5' -55.6 NC_003387.1 + 50790 0.66 0.691518
Target:  5'- cCGCCUGcGUCGCGgAUCgGgCGUUuacggGCGCc -3'
miRNA:   3'- -GCGGAC-CAGUGC-UAG-CgGCAA-----UGCGu -5'
12997 5' -55.6 NC_003387.1 + 12318 0.66 0.680678
Target:  5'- uCGCCgacguaGGUCACGugcagcUCGCCGccgACGUc -3'
miRNA:   3'- -GCGGa-----CCAGUGCu-----AGCGGCaa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 41157 0.66 0.680678
Target:  5'- aCGCCuUGGUgC-CGAUCGCCac--CGCAg -3'
miRNA:   3'- -GCGG-ACCA-GuGCUAGCGGcaauGCGU- -5'
12997 5' -55.6 NC_003387.1 + 6188 0.66 0.669792
Target:  5'- gGCCUuacuGGUCACGc-CGCCGUUgGUGCAg -3'
miRNA:   3'- gCGGA----CCAGUGCuaGCGGCAA-UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 27270 0.67 0.658871
Target:  5'- uGCCUGGUCGCGcgaggagaaCGCCGcacugGCGg- -3'
miRNA:   3'- gCGGACCAGUGCua-------GCGGCaa---UGCgu -5'
12997 5' -55.6 NC_003387.1 + 10469 0.67 0.658871
Target:  5'- uCGCCggUGGcaUgGCGAUCGCCaaggUugGCAg -3'
miRNA:   3'- -GCGG--ACC--AgUGCUAGCGGca--AugCGU- -5'
12997 5' -55.6 NC_003387.1 + 18691 0.67 0.658871
Target:  5'- aCGCCgaccaggugcgGGUCGCGcagCGCCaggGCGCGg -3'
miRNA:   3'- -GCGGa----------CCAGUGCua-GCGGcaaUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 40376 0.67 0.658871
Target:  5'- gGCgUUGGUgAUGAacUCGCCGUuagcgaUACGCGc -3'
miRNA:   3'- gCG-GACCAgUGCU--AGCGGCA------AUGCGU- -5'
12997 5' -55.6 NC_003387.1 + 3755 0.67 0.647926
Target:  5'- uGCCcGcGUgCACGAUCGCCagcucACGCAg -3'
miRNA:   3'- gCGGaC-CA-GUGCUAGCGGcaa--UGCGU- -5'
12997 5' -55.6 NC_003387.1 + 14520 0.67 0.643543
Target:  5'- gCGCCUGcGU-GCGGUacucggcggccggGCCGUUGCGCu -3'
miRNA:   3'- -GCGGAC-CAgUGCUAg------------CGGCAAUGCGu -5'
12997 5' -55.6 NC_003387.1 + 44962 0.67 0.626001
Target:  5'- gGCCgcggcucaGGcCGCGAUCGCCGcUGcCGCc -3'
miRNA:   3'- gCGGa-------CCaGUGCUAGCGGCaAU-GCGu -5'
12997 5' -55.6 NC_003387.1 + 47265 0.67 0.615043
Target:  5'- uGcCCUGGUCACcgcuuuGGcCGCCGUcgGCGCc -3'
miRNA:   3'- gC-GGACCAGUG------CUaGCGGCAa-UGCGu -5'
12997 5' -55.6 NC_003387.1 + 24177 0.68 0.593179
Target:  5'- cCGCCUcGGUCGCccaauuGUCGCCGggcUugGUg -3'
miRNA:   3'- -GCGGA-CCAGUGc-----UAGCGGCa--AugCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.