miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 16183 0.65 0.650345
Target:  5'- uUCCAAuaGGCGGCGuCGgugcugucggggcuCAGCCUGCGCu -3'
miRNA:   3'- cGGGUU--UUGUCGC-GC--------------GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 38523 0.66 0.647066
Target:  5'- cGCCCucAAGCucGCGCGCcAucacgacgcccucacGCCCGCGg- -3'
miRNA:   3'- -CGGGu-UUUGu-CGCGCG-U---------------UGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 37267 0.66 0.642692
Target:  5'- gGCCCGcguggcggucaAGGCgccuGGCGCGCucgUCgGCGCGg -3'
miRNA:   3'- -CGGGU-----------UUUG----UCGCGCGuu-GGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 28762 0.66 0.642692
Target:  5'- cGCCCGGcGCuGCGCaCGugCUGCaGCa -3'
miRNA:   3'- -CGGGUUuUGuCGCGcGUugGGCG-CGc -5'
13001 5' -56.7 NC_003387.1 + 26568 0.66 0.642692
Target:  5'- cGCCCuugcGGGCGGUGCcggGCAugcugGCUCGUGCu -3'
miRNA:   3'- -CGGGu---UUUGUCGCG---CGU-----UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 739 0.66 0.642692
Target:  5'- uGgCCGucGguGCGCGCGACgUgugGCGCGa -3'
miRNA:   3'- -CgGGUuuUguCGCGCGUUGgG---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 38627 0.66 0.642692
Target:  5'- gGCCCGcAGGCcgcgcuGGCGCuGCAGuuCCgGCGCa -3'
miRNA:   3'- -CGGGU-UUUG------UCGCG-CGUU--GGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25125 0.66 0.642692
Target:  5'- gGCCCucguacCAGCG-GCAcaCCGCGCa -3'
miRNA:   3'- -CGGGuuuu--GUCGCgCGUugGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 37145 0.66 0.642692
Target:  5'- uGCCCGGcAGCAGCcagGCGCGAaucggcugcaccUCCG-GCGg -3'
miRNA:   3'- -CGGGUU-UUGUCG---CGCGUU------------GGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 14801 0.66 0.642692
Target:  5'- uGCCCG--GCGGUGC-CGAgCCaCGCGg -3'
miRNA:   3'- -CGGGUuuUGUCGCGcGUUgGGcGCGC- -5'
13001 5' -56.7 NC_003387.1 + 18697 0.66 0.642692
Target:  5'- -aCCAGGuGCGGguCGCGCAGCgCCaggGCGCGg -3'
miRNA:   3'- cgGGUUU-UGUC--GCGCGUUG-GG---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 7840 0.66 0.642692
Target:  5'- cGCCCG--GCGGCuGCGuCAGCUCG-GCc -3'
miRNA:   3'- -CGGGUuuUGUCG-CGC-GUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 29754 0.66 0.642692
Target:  5'- cGCCCGAcacgauGAcCGGgGCGCcccacgcggucAGCuuGCGCGu -3'
miRNA:   3'- -CGGGUU------UU-GUCgCGCG-----------UUGggCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 21973 0.66 0.642692
Target:  5'- cGCCCGAcACGGUGCu--GCCCGacgaGCc -3'
miRNA:   3'- -CGGGUUuUGUCGCGcguUGGGCg---CGc -5'
13001 5' -56.7 NC_003387.1 + 35727 0.66 0.641599
Target:  5'- cGCCCGcu-CGGgGUcgaugacGCAGCCCGCccGCGc -3'
miRNA:   3'- -CGGGUuuuGUCgCG-------CGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 3180 0.66 0.631752
Target:  5'- gGCCCuc-GCAGcCGCGgaggcCAACCagcaGCGCa -3'
miRNA:   3'- -CGGGuuuUGUC-GCGC-----GUUGGg---CGCGc -5'
13001 5' -56.7 NC_003387.1 + 20995 0.66 0.631752
Target:  5'- aCCCcuAACucGCcUGCGACCUGCGCu -3'
miRNA:   3'- cGGGuuUUGu-CGcGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25576 0.66 0.631752
Target:  5'- cCCCG--GCGGCGC-CGACCCcgGCGgGc -3'
miRNA:   3'- cGGGUuuUGUCGCGcGUUGGG--CGCgC- -5'
13001 5' -56.7 NC_003387.1 + 21781 0.66 0.631752
Target:  5'- aGCCa---GCGGCGCaCGAUCUGCGaCGg -3'
miRNA:   3'- -CGGguuuUGUCGCGcGUUGGGCGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 49672 0.66 0.631752
Target:  5'- -aCCGAGGCGG-GCGgGaacGCCUGCGCc -3'
miRNA:   3'- cgGGUUUUGUCgCGCgU---UGGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.