miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13003 3' -56.8 NC_003387.1 + 17441 0.66 0.648392
Target:  5'- gGCGAaCGauAGGCgCCaGuCGUACCCgcggcGCCa -3'
miRNA:   3'- -CGCUaGU--UCCG-GGaC-GCAUGGGa----CGG- -5'
13003 3' -56.8 NC_003387.1 + 44936 0.66 0.648391
Target:  5'- gGCGA-CGAGGCgCUcGCGaagGCUCagGCCg -3'
miRNA:   3'- -CGCUaGUUCCGgGA-CGCa--UGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 6780 0.66 0.648391
Target:  5'- -aGAUCAAccuGGCCgaGCGcgacauggucGCCCUGCg -3'
miRNA:   3'- cgCUAGUU---CCGGgaCGCa---------UGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 50101 0.66 0.648391
Target:  5'- aCGAUCGccgAGGCCC-GCGaGCgCCUgGUCa -3'
miRNA:   3'- cGCUAGU---UCCGGGaCGCaUG-GGA-CGG- -5'
13003 3' -56.8 NC_003387.1 + 25465 0.66 0.648391
Target:  5'- cGCG-UCGcGGCUCaUGCGgcgcAUCCUGUCg -3'
miRNA:   3'- -CGCuAGUuCCGGG-ACGCa---UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 51635 0.66 0.64621
Target:  5'- cGCcGUCGAGGCCCUGacacuggcaauaGUGCC--GCUa -3'
miRNA:   3'- -CGcUAGUUCCGGGACg-----------CAUGGgaCGG- -5'
13003 3' -56.8 NC_003387.1 + 34823 0.66 0.637479
Target:  5'- gGCGucgagaauguucGUCGAcGGCCCgcGCGgGCCUUGCg -3'
miRNA:   3'- -CGC------------UAGUU-CCGGGa-CGCaUGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 46801 0.66 0.637478
Target:  5'- gGUGuUCGAcGGCCCgcgcUGCGUuaGCUcgCUGCCg -3'
miRNA:   3'- -CGCuAGUU-CCGGG----ACGCA--UGG--GACGG- -5'
13003 3' -56.8 NC_003387.1 + 16885 0.66 0.637478
Target:  5'- gGCGAUgcacgacauagcCGAcGCgCUGCaGUACCCgGCCg -3'
miRNA:   3'- -CGCUA------------GUUcCGgGACG-CAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 38071 0.66 0.626561
Target:  5'- cGCGAUCGcgauaacGCCCU-CG-GCCUUGCCc -3'
miRNA:   3'- -CGCUAGUuc-----CGGGAcGCaUGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 39703 0.66 0.615648
Target:  5'- aGCGA-CGugcGGGCgCUGuCG-ACCUUGCCc -3'
miRNA:   3'- -CGCUaGU---UCCGgGAC-GCaUGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 11411 0.66 0.615647
Target:  5'- cGCGAUCGgccccgAGGUgCUGUcgucgGUGCUCgUGCCc -3'
miRNA:   3'- -CGCUAGU------UCCGgGACG-----CAUGGG-ACGG- -5'
13003 3' -56.8 NC_003387.1 + 45755 0.66 0.615647
Target:  5'- aGUGGUCcgAGGGCgCgCUGUG-GCgCCUGCCc -3'
miRNA:   3'- -CGCUAG--UUCCG-G-GACGCaUG-GGACGG- -5'
13003 3' -56.8 NC_003387.1 + 38447 0.66 0.615647
Target:  5'- -----gAAGGCCCacgacUGCGUGuuCUGCCc -3'
miRNA:   3'- cgcuagUUCCGGG-----ACGCAUggGACGG- -5'
13003 3' -56.8 NC_003387.1 + 5553 0.66 0.604749
Target:  5'- gGCGAccacCAGGGCCaCcGCGgUGCCC-GCUa -3'
miRNA:   3'- -CGCUa---GUUCCGG-GaCGC-AUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 9914 0.66 0.604749
Target:  5'- cGCcGUCGGGGCUCggcugccaccGCGUGCCUUuCCa -3'
miRNA:   3'- -CGcUAGUUCCGGGa---------CGCAUGGGAcGG- -5'
13003 3' -56.8 NC_003387.1 + 44447 0.66 0.604748
Target:  5'- cGCGcaCGAGGCgCUGCGcgagGCgCUGCa -3'
miRNA:   3'- -CGCuaGUUCCGgGACGCa---UGgGACGg -5'
13003 3' -56.8 NC_003387.1 + 40966 0.66 0.591701
Target:  5'- cGCGAUCGAGGCCgaGCuGaaagcgcaagcauggUGCCUgaucggcgucgacgGCCg -3'
miRNA:   3'- -CGCUAGUUCCGGgaCG-C---------------AUGGGa-------------CGG- -5'
13003 3' -56.8 NC_003387.1 + 1481 0.67 0.583029
Target:  5'- gGCGAUgggCAuauGGCCCaaggucaGCGUGCaCCaGCCg -3'
miRNA:   3'- -CGCUA---GUu--CCGGGa------CGCAUG-GGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 5702 0.67 0.583029
Target:  5'- gGCGGUCAAGG----GCGUGCCCgcGUCg -3'
miRNA:   3'- -CGCUAGUUCCgggaCGCAUGGGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.