miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13091 3' -60.2 NC_003401.1 + 28061 0.66 0.69853
Target:  5'- uGGCGAGaCGGuGCcggAGcGUAGCCGUACg- -3'
miRNA:   3'- gUCGCUC-GUC-CG---UC-CGUCGGCAUGgg -5'
13091 3' -60.2 NC_003401.1 + 118176 0.66 0.69853
Target:  5'- uCAGUGAcccGCGGGCGaccccGGCGGCgGcACCg -3'
miRNA:   3'- -GUCGCU---CGUCCGU-----CCGUCGgCaUGGg -5'
13091 3' -60.2 NC_003401.1 + 132499 0.66 0.678551
Target:  5'- cCGGcCGAGCccGGC-GGC-GCCGcGCCCc -3'
miRNA:   3'- -GUC-GCUCGu-CCGuCCGuCGGCaUGGG- -5'
13091 3' -60.2 NC_003401.1 + 921 0.66 0.678551
Target:  5'- -cGC-AGCuGGCcGGCAGCCcUACUCu -3'
miRNA:   3'- guCGcUCGuCCGuCCGUCGGcAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 133636 0.66 0.678551
Target:  5'- -cGC-AGCuGGCcGGCAGCCcUACUCu -3'
miRNA:   3'- guCGcUCGuCCGuCCGUCGGcAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 22369 0.66 0.677547
Target:  5'- gCAGCGGGauuUAGaaacaccauuaacGCAGacGCGGCCGUGCCa -3'
miRNA:   3'- -GUCGCUC---GUC-------------CGUC--CGUCGGCAUGGg -5'
13091 3' -60.2 NC_003401.1 + 22768 0.66 0.668501
Target:  5'- aCGGCGAGCGuGGCGcugguGGCAacGCaCGagcgACCCc -3'
miRNA:   3'- -GUCGCUCGU-CCGU-----CCGU--CG-GCa---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 66863 0.66 0.668501
Target:  5'- -cGCGAGCGcccCAGGCAGCUacggGCCUg -3'
miRNA:   3'- guCGCUCGUcc-GUCCGUCGGca--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 63792 0.66 0.668501
Target:  5'- aGGCGGGCgAGGCccguGGCgaaaAGCCGUcagcuucuccGCCa -3'
miRNA:   3'- gUCGCUCG-UCCGu---CCG----UCGGCA----------UGGg -5'
13091 3' -60.2 NC_003401.1 + 80103 0.66 0.654385
Target:  5'- aGGCGGGCAGGguaucugaauacaCGGuaaaGCAGCugcucgggcuacuuCGUACCCg -3'
miRNA:   3'- gUCGCUCGUCC-------------GUC----CGUCG--------------GCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 96386 0.66 0.648324
Target:  5'- aUAGaCGAGUGGGCGGGCaaaGGCuCGUcGCgCa -3'
miRNA:   3'- -GUC-GCUCGUCCGUCCG---UCG-GCA-UGgG- -5'
13091 3' -60.2 NC_003401.1 + 48427 0.66 0.648324
Target:  5'- aAGUG-GCAgcGGCAagauccGCGGCCGUugCCg -3'
miRNA:   3'- gUCGCuCGU--CCGUc-----CGUCGGCAugGG- -5'
13091 3' -60.2 NC_003401.1 + 24774 0.67 0.638212
Target:  5'- -uGCGAGCGGGCuAGGaacaaaAGCCGcaGCgCg -3'
miRNA:   3'- guCGCUCGUCCG-UCCg-----UCGGCa-UGgG- -5'
13091 3' -60.2 NC_003401.1 + 117017 0.67 0.627085
Target:  5'- uUAGgGGGUuccccagguaccuAGGUcGGCAGCCuGUGCCUc -3'
miRNA:   3'- -GUCgCUCG-------------UCCGuCCGUCGG-CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 82589 0.67 0.617983
Target:  5'- uCGGCGAuCGGuGCGGcGCAuaUGUGCCCu -3'
miRNA:   3'- -GUCGCUcGUC-CGUC-CGUcgGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 125222 0.67 0.617983
Target:  5'- uGGCGucgcGCGGGUaucucacgcccAGGUaccGGCCGUugGCCCa -3'
miRNA:   3'- gUCGCu---CGUCCG-----------UCCG---UCGGCA--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 110891 0.67 0.607881
Target:  5'- uCGGgGGGCguauAGGCAGGUgaggcacaaccAGCCGUAgUCu -3'
miRNA:   3'- -GUCgCUCG----UCCGUCCG-----------UCGGCAUgGG- -5'
13091 3' -60.2 NC_003401.1 + 23643 0.67 0.597796
Target:  5'- -cGCGAGCGgccGGCAGGUggcGCCGcgcuuuCCCc -3'
miRNA:   3'- guCGCUCGU---CCGUCCGu--CGGCau----GGG- -5'
13091 3' -60.2 NC_003401.1 + 122108 0.67 0.587735
Target:  5'- gCAGgGGGCGuGGCAcGGCcgcgccAGCCGccgcACCCg -3'
miRNA:   3'- -GUCgCUCGU-CCGU-CCG------UCGGCa---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 12445 0.68 0.577706
Target:  5'- -uGUGAGCAcGCGGGC-GCCGagGCCg -3'
miRNA:   3'- guCGCUCGUcCGUCCGuCGGCa-UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.