miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 14221 0.66 0.904129
Target:  5'- cGcCCGGggGCGCUAGAggGUgUCGGg -3'
miRNA:   3'- aCuGGUCuuUGCGGUCUagCGgGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132381 0.66 0.897706
Target:  5'- cGGCCcggcGGcgGCGCCGGccgggCGCCuCCGGg -3'
miRNA:   3'- aCUGG----UCuuUGCGGUCua---GCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 108709 0.66 0.897706
Target:  5'- aGGCCAGAAgucccGCGUCcGAagGgCCCGGg -3'
miRNA:   3'- aCUGGUCUU-----UGCGGuCUagCgGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 88700 0.66 0.897706
Target:  5'- --gUCAGAGACGCCAcccgCGCCCUu- -3'
miRNA:   3'- acuGGUCUUUGCGGUcua-GCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 124965 0.66 0.891048
Target:  5'- gGACUGGAAG-GCCAG--CGCCCaCGGg -3'
miRNA:   3'- aCUGGUCUUUgCGGUCuaGCGGG-GCU- -5'
13105 5' -55.9 NC_003401.1 + 132436 0.66 0.891048
Target:  5'- gGGCCGGGGcCGCCcccGGGUgcCGCUCCGc -3'
miRNA:   3'- aCUGGUCUUuGCGG---UCUA--GCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 13259 0.66 0.891048
Target:  5'- gUGACCgGGggGCGCgaguagCAGAUC-CCCgGGg -3'
miRNA:   3'- -ACUGG-UCuuUGCG------GUCUAGcGGGgCU- -5'
13105 5' -55.9 NC_003401.1 + 48232 0.66 0.88416
Target:  5'- cGcCCAGGuAAUGUgAGGggacaaguaaUCGCCCCGAc -3'
miRNA:   3'- aCuGGUCU-UUGCGgUCU----------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 120213 0.66 0.88416
Target:  5'- cGGCCAGugggaAAACGCUAGcAUCcgccugguggGCCCUGGc -3'
miRNA:   3'- aCUGGUC-----UUUGCGGUC-UAG----------CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 20614 0.66 0.877044
Target:  5'- cGGCCAGcccuACGCUGGcgCcucCCCCGAc -3'
miRNA:   3'- aCUGGUCuu--UGCGGUCuaGc--GGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 104842 0.66 0.877044
Target:  5'- cUGGCCAccGAGuccauCGCCGGG-CGCgCCGGa -3'
miRNA:   3'- -ACUGGU--CUUu----GCGGUCUaGCGgGGCU- -5'
13105 5' -55.9 NC_003401.1 + 127524 0.66 0.877044
Target:  5'- aGACaaAGAGGCG-CAGGcCGCCCCGc -3'
miRNA:   3'- aCUGg-UCUUUGCgGUCUaGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 107222 0.66 0.877044
Target:  5'- cGaACCGGAcGACuCCAGGUggacCGCCCCGc -3'
miRNA:   3'- aC-UGGUCU-UUGcGGUCUA----GCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 132211 0.66 0.877044
Target:  5'- gGGcCCGGAGGCGCCcGGccggCGCCgCCGc -3'
miRNA:   3'- aCU-GGUCUUUGCGGuCUa---GCGG-GGCu -5'
13105 5' -55.9 NC_003401.1 + 132295 0.66 0.869706
Target:  5'- gGGCCcgc-GCGCCGGG-CGCCgCCGGc -3'
miRNA:   3'- aCUGGucuuUGCGGUCUaGCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 15676 0.66 0.869706
Target:  5'- cUGGCCaAGAuucAgGCCAGGcgCGUCCUGAc -3'
miRNA:   3'- -ACUGG-UCUu--UgCGGUCUa-GCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 52055 0.66 0.869706
Target:  5'- cGACCGuugucGGAACGCUAGAaacgUCGCUgCGu -3'
miRNA:   3'- aCUGGU-----CUUUGCGGUCU----AGCGGgGCu -5'
13105 5' -55.9 NC_003401.1 + 132514 0.66 0.869706
Target:  5'- cGGCCGGggGCGgCGGc-CGCgggCCCGGg -3'
miRNA:   3'- aCUGGUCuuUGCgGUCuaGCG---GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 119232 0.66 0.868213
Target:  5'- gUGACUGGuuGCGCCugcgaccaagcuGGUCGCCCg-- -3'
miRNA:   3'- -ACUGGUCuuUGCGGu-----------CUAGCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 84213 0.67 0.862152
Target:  5'- -aGCCGGGAAUGCCGcugccCGCCCCc- -3'
miRNA:   3'- acUGGUCUUUGCGGUcua--GCGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.