miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13106 5' -56.3 NC_003401.1 + 118110 0.66 0.902884
Target:  5'- aCGGUGGGGgccgcgCGcCACCAUGGGc -3'
miRNA:   3'- -GCCGCCUCgaauuaGC-GUGGUGCCCc -5'
13106 5' -56.3 NC_003401.1 + 122349 0.66 0.902884
Target:  5'- gGGUGGcAGUgugUAAgucacgCGCGCCGCGGc- -3'
miRNA:   3'- gCCGCC-UCGa--AUUa-----GCGUGGUGCCcc -5'
13106 5' -56.3 NC_003401.1 + 93544 0.66 0.902884
Target:  5'- uCGGUGGGaCUcaaUAGUCGCACCucauCGGa- -3'
miRNA:   3'- -GCCGCCUcGA---AUUAGCGUGGu---GCCcc -5'
13106 5' -56.3 NC_003401.1 + 71929 0.66 0.896493
Target:  5'- uCGcGCGGAGUcgauuUUAcuaccgggagugGUUGCGCCAauucCGGGGu -3'
miRNA:   3'- -GC-CGCCUCG-----AAU------------UAGCGUGGU----GCCCC- -5'
13106 5' -56.3 NC_003401.1 + 72543 0.66 0.88303
Target:  5'- aGGCGGAaucGCUgcca-GCGCgGaCGGGGc -3'
miRNA:   3'- gCCGCCU---CGAauuagCGUGgU-GCCCC- -5'
13106 5' -56.3 NC_003401.1 + 18434 0.66 0.88303
Target:  5'- uCGGCGGAGUgucacgUGucccuaCGCGacaACGGGGu -3'
miRNA:   3'- -GCCGCCUCGa-----AUua----GCGUgg-UGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 51732 0.66 0.88303
Target:  5'- gGGCGGAGUc--AUCGCAUUagGCGGa- -3'
miRNA:   3'- gCCGCCUCGaauUAGCGUGG--UGCCcc -5'
13106 5' -56.3 NC_003401.1 + 132413 0.66 0.875965
Target:  5'- -cGCGGGGCcgGGg-GUcCCGCGGGGg -3'
miRNA:   3'- gcCGCCUCGaaUUagCGuGGUGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 125612 0.66 0.868683
Target:  5'- gCGG-GGAGUUUGGguuccaGCuCCugGGGGc -3'
miRNA:   3'- -GCCgCCUCGAAUUag----CGuGGugCCCC- -5'
13106 5' -56.3 NC_003401.1 + 117927 0.67 0.861191
Target:  5'- gCGGCGGGGUcgcggcgaGGUCaCGCCgaaccgggcGCGGGGg -3'
miRNA:   3'- -GCCGCCUCGaa------UUAGcGUGG---------UGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 132688 0.67 0.841577
Target:  5'- uCGGCGGGGCccggcgcggggCGCgACCgagggccccgggagaACGGGGa -3'
miRNA:   3'- -GCCGCCUCGaauua------GCG-UGG---------------UGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 119176 0.67 0.837509
Target:  5'- aGGCGaGAGaCUguAUCGCgGuuGCGGGGu -3'
miRNA:   3'- gCCGC-CUC-GAauUAGCG-UggUGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 27699 0.68 0.820784
Target:  5'- cCGGCGuGGUggc-UCGCcgGCUGCGGGGg -3'
miRNA:   3'- -GCCGCcUCGaauuAGCG--UGGUGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 14918 0.68 0.820784
Target:  5'- aCGGCccuGGAGUUUGAcUGCAgCugGGaGGa -3'
miRNA:   3'- -GCCG---CCUCGAAUUaGCGUgGugCC-CC- -5'
13106 5' -56.3 NC_003401.1 + 132714 0.68 0.820784
Target:  5'- cCGGCaucgGGAGCcg---CGCGCCGCGGc- -3'
miRNA:   3'- -GCCG----CCUCGaauuaGCGUGGUGCCcc -5'
13106 5' -56.3 NC_003401.1 + 16999 0.68 0.795341
Target:  5'- aGGUGGGGCagguugguggucuugUAAUCGCAg-ACGGGGc -3'
miRNA:   3'- gCCGCCUCGa--------------AUUAGCGUggUGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 132485 0.68 0.776138
Target:  5'- cCGGCGGGGCgga---GgGCCGggagcCGGGGg -3'
miRNA:   3'- -GCCGCCUCGaauuagCgUGGU-----GCCCC- -5'
13106 5' -56.3 NC_003401.1 + 15030 0.69 0.766791
Target:  5'- aGGCGGGGCgugGcgCGCGCgCACGa-- -3'
miRNA:   3'- gCCGCCUCGaa-UuaGCGUG-GUGCccc -5'
13106 5' -56.3 NC_003401.1 + 132452 0.69 0.738072
Target:  5'- cCGGCGGcGCccgGcgCGCggGCC-CGGGGg -3'
miRNA:   3'- -GCCGCCuCGaa-UuaGCG--UGGuGCCCC- -5'
13106 5' -56.3 NC_003401.1 + 9093 0.69 0.718453
Target:  5'- uCGGUaaucuuGGAGCUUAuaCGaCACCugGGGa -3'
miRNA:   3'- -GCCG------CCUCGAAUuaGC-GUGGugCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.