Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13114 | 3' | -56.1 | NC_003401.1 | + | 28032 | 1.11 | 0.002119 |
Target: 5'- aGGACGCCGACCAACGACCGCAACCACc -3' miRNA: 3'- -CCUGCGGCUGGUUGCUGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 132219 | 0.81 | 0.18669 |
Target: 5'- aGGCGcCCGGCCGGCGccgccgccggGCCGCGGCCGCc -3' miRNA: 3'- cCUGC-GGCUGGUUGC----------UGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 103096 | 0.79 | 0.250463 |
Target: 5'- cGGACGCUGAUCAcccaauucaACGGCCacgaGCGACCGCc -3' miRNA: 3'- -CCUGCGGCUGGU---------UGCUGG----CGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23636 | 0.77 | 0.323763 |
Target: 5'- cGGGCGCCG-CgAGCGGCCGgCAgguggcGCCGCg -3' miRNA: 3'- -CCUGCGGCuGgUUGCUGGC-GU------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 132753 | 0.76 | 0.394803 |
Target: 5'- gGGAgGCCGGCgGAgGACCGCcaugccgggcgcGGCCGCc -3' miRNA: 3'- -CCUgCGGCUGgUUgCUGGCG------------UUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 94389 | 0.76 | 0.370032 |
Target: 5'- uGGCGCUGauGCCAACGGCCGgAACCu- -3' miRNA: 3'- cCUGCGGC--UGGUUGCUGGCgUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 132524 | 0.75 | 0.429452 |
Target: 5'- cGGCGCggggCGGCCGGgGGCgGCGGCCGCg -3' miRNA: 3'- cCUGCG----GCUGGUUgCUGgCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 19787 | 0.75 | 0.438391 |
Target: 5'- aGGGCGCgCGAUCggUGGCCGaggagcuGCCGCa -3' miRNA: 3'- -CCUGCG-GCUGGuuGCUGGCgu-----UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 82386 | 0.75 | 0.411902 |
Target: 5'- uGGCGCaCGACag--GACCGCAACCGCc -3' miRNA: 3'- cCUGCG-GCUGguugCUGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 108828 | 0.74 | 0.47517 |
Target: 5'- uGGCGCCGACCGuccCGugCgGCAACC-Cg -3' miRNA: 3'- cCUGCGGCUGGUu--GCugG-CGUUGGuG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 132346 | 0.73 | 0.542922 |
Target: 5'- --cCGCCGGCCcGgGcCCGCGGCCGCc -3' miRNA: 3'- ccuGCGGCUGGuUgCuGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117763 | 0.73 | 0.552881 |
Target: 5'- -cGCGgCGGCCAugGucGCCGCGGCCGu -3' miRNA: 3'- ccUGCgGCUGGUugC--UGGCGUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 119731 | 0.72 | 0.613551 |
Target: 5'- uGGugGCa-ACCGAcuCGGCgGCGGCCGCg -3' miRNA: 3'- -CCugCGgcUGGUU--GCUGgCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 132370 | 0.72 | 0.612532 |
Target: 5'- cGGCGCCGGCCgGGCGccuccggGCC-CGGCCGCu -3' miRNA: 3'- cCUGCGGCUGG-UUGC-------UGGcGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 20708 | 0.72 | 0.593197 |
Target: 5'- uGGCGuuGACCGGCcGCCGC--CCGCg -3' miRNA: 3'- cCUGCggCUGGUUGcUGGCGuuGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 12435 | 0.72 | 0.583059 |
Target: 5'- cGGGCGCCGagGCCGuuuuCGGuuuucuCCGCGACCGa -3' miRNA: 3'- -CCUGCGGC--UGGUu---GCU------GGCGUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 78065 | 0.72 | 0.583059 |
Target: 5'- cGugGCCguauGugCGuCGACCGCGGCCAg -3' miRNA: 3'- cCugCGG----CugGUuGCUGGCGUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 122098 | 0.72 | 0.562894 |
Target: 5'- uGGcACgGCCGcGCCAGCcGCCGCAcCCGCg -3' miRNA: 3'- -CC-UG-CGGC-UGGUUGcUGGCGUuGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 8874 | 0.71 | 0.623753 |
Target: 5'- gGGGCGCgG--CGugGACCGCAACCu- -3' miRNA: 3'- -CCUGCGgCugGUugCUGGCGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 101700 | 0.71 | 0.664544 |
Target: 5'- cGGGCGCUGAagGAacaGAUCGCcAACCACc -3' miRNA: 3'- -CCUGCGGCUggUUg--CUGGCG-UUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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