miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 133650 0.66 0.880691
Target:  5'- cGGACGCCcucgcACgCAGCuGGCCgGCAGCCc- -3'
miRNA:   3'- -CCUGCGGc----UG-GUUG-CUGG-CGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 133484 0.67 0.833866
Target:  5'- aGGGCuGCCGGCCAgcugcgugcgaggGCGuCCGagGGCCAg -3'
miRNA:   3'- -CCUG-CGGCUGGU-------------UGCuGGCg-UUGGUg -5'
13114 3' -56.1 NC_003401.1 + 132812 0.66 0.907044
Target:  5'- cGGGCcCCGGCCccccucccGGCGGCgCGgaGACCACc -3'
miRNA:   3'- -CCUGcGGCUGG--------UUGCUG-GCg-UUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132753 0.76 0.394803
Target:  5'- gGGAgGCCGGCgGAgGACCGCcaugccgggcgcGGCCGCc -3'
miRNA:   3'- -CCUgCGGCUGgUUgCUGGCG------------UUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132653 0.66 0.900799
Target:  5'- cGGCGCCG-CCGggcuCGGCCG-GACCGg -3'
miRNA:   3'- cCUGCGGCuGGUu---GCUGGCgUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 132559 0.68 0.791279
Target:  5'- cGGCGCgCGGCUcccgaugccgGGCGGCCGCcGCCcgGCa -3'
miRNA:   3'- cCUGCG-GCUGG----------UUGCUGGCGuUGG--UG- -5'
13114 3' -56.1 NC_003401.1 + 132524 0.75 0.429452
Target:  5'- cGGCGCggggCGGCCGGgGGCgGCGGCCGCg -3'
miRNA:   3'- cCUGCG----GCUGGUUgCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132467 0.67 0.834693
Target:  5'- cGGGC-CCGGCCGACucCCGgGAgCGCc -3'
miRNA:   3'- -CCUGcGGCUGGUUGcuGGCgUUgGUG- -5'
13114 3' -56.1 NC_003401.1 + 132401 0.71 0.664544
Target:  5'- cGGGCGCaagaUGGCGGCCGCGGCCcgGCg -3'
miRNA:   3'- -CCUGCGgcugGUUGCUGGCGUUGG--UG- -5'
13114 3' -56.1 NC_003401.1 + 132370 0.72 0.612532
Target:  5'- cGGCGCCGGCCgGGCGccuccggGCC-CGGCCGCu -3'
miRNA:   3'- cCUGCGGCUGG-UUGC-------UGGcGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132346 0.73 0.542922
Target:  5'- --cCGCCGGCCcGgGcCCGCGGCCGCc -3'
miRNA:   3'- ccuGCGGCUGGuUgCuGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132219 0.81 0.18669
Target:  5'- aGGCGcCCGGCCGGCGccgccgccggGCCGCGGCCGCc -3'
miRNA:   3'- cCUGC-GGCUGGUUGC----------UGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 128310 0.66 0.894323
Target:  5'- -uACGCCG-UCAugGcCCGCAggaGCUACa -3'
miRNA:   3'- ccUGCGGCuGGUugCuGGCGU---UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 126454 0.69 0.763452
Target:  5'- cGGugGCCGugaUGACGACUGCGuuaaACgGCa -3'
miRNA:   3'- -CCugCGGCug-GUUGCUGGCGU----UGgUG- -5'
13114 3' -56.1 NC_003401.1 + 125744 0.67 0.858607
Target:  5'- aGGCGCCacuGCUGGCGGCCuCGACgGCg -3'
miRNA:   3'- cCUGCGGc--UGGUUGCUGGcGUUGgUG- -5'
13114 3' -56.1 NC_003401.1 + 125653 0.67 0.85083
Target:  5'- aGGuCGUCGGuggaGACGGCCGCGACguCg -3'
miRNA:   3'- -CCuGCGGCUgg--UUGCUGGCGUUGguG- -5'
13114 3' -56.1 NC_003401.1 + 125420 0.69 0.760608
Target:  5'- gGGGCcucguccucccaggGUgGGCCAACGGCCGguACCu- -3'
miRNA:   3'- -CCUG--------------CGgCUGGUUGCUGGCguUGGug -5'
13114 3' -56.1 NC_003401.1 + 125259 0.66 0.880691
Target:  5'- --cCGUCuGCCAAcuCGGCCGUGGCCGCc -3'
miRNA:   3'- ccuGCGGcUGGUU--GCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 125077 0.66 0.880691
Target:  5'- uGGCGcCCGuCCggUGACgugaugGCGGCCACg -3'
miRNA:   3'- cCUGC-GGCuGGuuGCUGg-----CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 123601 0.67 0.858607
Target:  5'- -aAUGCCuaaaaCGGCGGCCGCuGCCACc -3'
miRNA:   3'- ccUGCGGcug--GUUGCUGGCGuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.