miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13127 3' -63.2 NC_003401.1 + 118842 0.66 0.577532
Target:  5'- -cGGAgAUCCcCCGUGCGCaucgccGCCCu -3'
miRNA:   3'- guCCUgUAGGcGGCGCGCGgac---CGGG- -5'
13127 3' -63.2 NC_003401.1 + 93321 0.66 0.575588
Target:  5'- aUAGGACuuuUUCGCCuucgcggaaucauGCGCgggguguGCCUGGCUa -3'
miRNA:   3'- -GUCCUGu--AGGCGG-------------CGCG-------CGGACCGGg -5'
13127 3' -63.2 NC_003401.1 + 15963 0.66 0.567825
Target:  5'- gGGGuugACA-CCGUCGCGC-CCUGauaGCCCc -3'
miRNA:   3'- gUCC---UGUaGGCGGCGCGcGGAC---CGGG- -5'
13127 3' -63.2 NC_003401.1 + 73745 0.66 0.567825
Target:  5'- aGGGGCuuaCCGUCGaCGCGaCCaaaUGGaCCCa -3'
miRNA:   3'- gUCCUGua-GGCGGC-GCGC-GG---ACC-GGG- -5'
13127 3' -63.2 NC_003401.1 + 133559 0.66 0.567825
Target:  5'- -cGGA---CCGCCGgGCaCCcGGCCCa -3'
miRNA:   3'- guCCUguaGGCGGCgCGcGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132541 0.66 0.558159
Target:  5'- cCGGGGCcccacaagCCGCgGCGCGC--GGCUCc -3'
miRNA:   3'- -GUCCUGua------GGCGgCGCGCGgaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 56205 0.66 0.558159
Target:  5'- -cGGAUAUCUGCUGUGUuacuauGCgUGGgCCa -3'
miRNA:   3'- guCCUGUAGGCGGCGCG------CGgACCgGG- -5'
13127 3' -63.2 NC_003401.1 + 98290 0.66 0.558159
Target:  5'- -uGGAUAggCCacaGCuCGCGaGCCUGGCCUu -3'
miRNA:   3'- guCCUGUa-GG---CG-GCGCgCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 85086 0.66 0.54854
Target:  5'- gGGGACccgUGUCGCGCGgggagggggaCCUGGCCa -3'
miRNA:   3'- gUCCUGuagGCGGCGCGC----------GGACCGGg -5'
13127 3' -63.2 NC_003401.1 + 119954 0.66 0.54854
Target:  5'- -cGGug--CCGCUGCGcCGCCUccGGCCa -3'
miRNA:   3'- guCCuguaGGCGGCGC-GCGGA--CCGGg -5'
13127 3' -63.2 NC_003401.1 + 132334 0.66 0.538975
Target:  5'- -cGGcCcUCCGCCcCGCcgGCCcgGGCCCg -3'
miRNA:   3'- guCCuGuAGGCGGcGCG--CGGa-CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 16249 0.66 0.538975
Target:  5'- aCGGGuCAUCgcaCGCCGCcaggguGCGCCggaucGCCCu -3'
miRNA:   3'- -GUCCuGUAG---GCGGCG------CGCGGac---CGGG- -5'
13127 3' -63.2 NC_003401.1 + 27533 0.66 0.537068
Target:  5'- gGGGGC--CgGCUGUGCGCUggccuccaccggGGCCCg -3'
miRNA:   3'- gUCCUGuaGgCGGCGCGCGGa-----------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 84211 0.66 0.529466
Target:  5'- cCGGGAaugCCGCUGCcCGCCcccuuGCCCa -3'
miRNA:   3'- -GUCCUguaGGCGGCGcGCGGac---CGGG- -5'
13127 3' -63.2 NC_003401.1 + 132741 0.67 0.52002
Target:  5'- gAGGACcgCCauGCCGgGCGC--GGCCg -3'
miRNA:   3'- gUCCUGuaGG--CGGCgCGCGgaCCGGg -5'
13127 3' -63.2 NC_003401.1 + 38197 0.67 0.52002
Target:  5'- cUAGGACG--CGagGCGUuucGCCUGGCCCc -3'
miRNA:   3'- -GUCCUGUagGCggCGCG---CGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 10336 0.67 0.51064
Target:  5'- gAGGACcggaCGCCGUGCuGCgUGGCguCCg -3'
miRNA:   3'- gUCCUGuag-GCGGCGCG-CGgACCG--GG- -5'
13127 3' -63.2 NC_003401.1 + 123358 0.67 0.51064
Target:  5'- aUAGG-CGguuuggCCGCgGCGCGgccCCUGGaCCCc -3'
miRNA:   3'- -GUCCuGUa-----GGCGgCGCGC---GGACC-GGG- -5'
13127 3' -63.2 NC_003401.1 + 18007 0.67 0.501332
Target:  5'- gGGGAgAUCCG-CGCGUcCCUGuGCgCCg -3'
miRNA:   3'- gUCCUgUAGGCgGCGCGcGGAC-CG-GG- -5'
13127 3' -63.2 NC_003401.1 + 86653 0.67 0.495783
Target:  5'- cCAGGAgAUgucCCGCCGCGUGaCUgugcguggauuuucaUGuGCCCg -3'
miRNA:   3'- -GUCCUgUA---GGCGGCGCGC-GG---------------AC-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.