miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13148 3' -56.6 NC_003401.1 + 32510 0.66 0.899637
Target:  5'- aCgCGGAcACCUuGGGACGCGcgccaccGCCCGg -3'
miRNA:   3'- gGgGCCU-UGGGuUUCUGUGCa------CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 127701 0.66 0.899637
Target:  5'- aCCUgGGAGCCCu-GGucuCGCGgggcgGCCUGc -3'
miRNA:   3'- -GGGgCCUUGGGuuUCu--GUGCa----CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 14516 0.66 0.899
Target:  5'- cUCCUGGGGCgaaCCGAGGACggcaccaGCGUGUgCGu -3'
miRNA:   3'- -GGGGCCUUG---GGUUUCUG-------UGCACGgGC- -5'
13148 3' -56.6 NC_003401.1 + 18886 0.66 0.89317
Target:  5'- uCCCCGaucGCCCAGAGugGCGcugGCaaaggcgaagCCGg -3'
miRNA:   3'- -GGGGCcu-UGGGUUUCugUGCa--CG----------GGC- -5'
13148 3' -56.6 NC_003401.1 + 17668 0.66 0.892511
Target:  5'- gCUCGGAGggcacCCCAAAGcccaccuGCGCGaccgaaagccUGCCCGg -3'
miRNA:   3'- gGGGCCUU-----GGGUUUC-------UGUGC----------ACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 69502 0.66 0.89052
Target:  5'- gCCCGcGGACCCuuccaccugccGAgACGUGCCgGc -3'
miRNA:   3'- gGGGC-CUUGGGuuu--------CUgUGCACGGgC- -5'
13148 3' -56.6 NC_003401.1 + 8811 0.66 0.886479
Target:  5'- gCCgCGGAGCCCA---GCACGUGgggguauucCUCGg -3'
miRNA:   3'- -GGgGCCUUGGGUuucUGUGCAC---------GGGC- -5'
13148 3' -56.6 NC_003401.1 + 113754 0.66 0.886479
Target:  5'- ---aGGGACCCAAAGACACaGUcUCCa -3'
miRNA:   3'- ggggCCUUGGGUUUCUGUG-CAcGGGc -5'
13148 3' -56.6 NC_003401.1 + 132405 0.66 0.886479
Target:  5'- gCCCCGG-GCgCAAgauggcGGcCGCG-GCCCGg -3'
miRNA:   3'- -GGGGCCuUGgGUU------UCuGUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 21810 0.66 0.879568
Target:  5'- aCUCCGGGuuuuuuccgcACCCGAAGGugcCGCGgccGUCCGc -3'
miRNA:   3'- -GGGGCCU----------UGGGUUUCU---GUGCa--CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 49937 0.66 0.879568
Target:  5'- gCUuuGGGgucaaagagcagGCCCaAAAGAUuaACGUGUCCGg -3'
miRNA:   3'- -GGggCCU------------UGGG-UUUCUG--UGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 21831 0.66 0.872441
Target:  5'- --gCGGGGCcgaCCAcAGGCGCG-GCCCGg -3'
miRNA:   3'- gggGCCUUG---GGUuUCUGUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 80027 0.66 0.865103
Target:  5'- aCCCCaGAgGCCCGAGGGCACaa-CCUGc -3'
miRNA:   3'- -GGGGcCU-UGGGUUUCUGUGcacGGGC- -5'
13148 3' -56.6 NC_003401.1 + 20385 0.66 0.865103
Target:  5'- cCCCUGGu-CCUgucaagAGAGGCGCGguugccgGCCCa -3'
miRNA:   3'- -GGGGCCuuGGG------UUUCUGUGCa------CGGGc -5'
13148 3' -56.6 NC_003401.1 + 19138 0.67 0.85756
Target:  5'- gCCUGGAGCCCuccuGGcuGCACGcGUCUGu -3'
miRNA:   3'- gGGGCCUUGGGuu--UC--UGUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 12235 0.67 0.85756
Target:  5'- uCCCCGuucuGCCaCAAcGACucaACGUGCUCGg -3'
miRNA:   3'- -GGGGCcu--UGG-GUUuCUG---UGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 29763 0.67 0.85756
Target:  5'- aCCCaGGGCUCGuGGucaGCGUGCCCc -3'
miRNA:   3'- gGGGcCUUGGGUuUCug-UGCACGGGc -5'
13148 3' -56.6 NC_003401.1 + 6055 0.67 0.85756
Target:  5'- aCgCCGGAcaACCCcugGAAGAUAaucaggggucuCGUGCCCc -3'
miRNA:   3'- -GgGGCCU--UGGG---UUUCUGU-----------GCACGGGc -5'
13148 3' -56.6 NC_003401.1 + 9236 0.67 0.849816
Target:  5'- -gCCGuGGACUauCGAGGACGCGggUGCCCu -3'
miRNA:   3'- ggGGC-CUUGG--GUUUCUGUGC--ACGGGc -5'
13148 3' -56.6 NC_003401.1 + 108874 0.67 0.84188
Target:  5'- gUCCCGG-GCCCuucGGACGCGggacuucugGCCUc -3'
miRNA:   3'- -GGGGCCuUGGGuu-UCUGUGCa--------CGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.