miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 3' -62.3 NC_003401.1 + 16832 0.66 0.638143
Target:  5'- -uGCgGCGGCCGCUUGcacaacagccGCgCCGCaGCCu -3'
miRNA:   3'- cuUGgCGCUGGCGGAC----------CG-GGCGcUGG- -5'
13190 3' -62.3 NC_003401.1 + 72476 0.66 0.62832
Target:  5'- --cCCGCGcgucACgGCCuUGG-CCGUGGCCg -3'
miRNA:   3'- cuuGGCGC----UGgCGG-ACCgGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 119286 0.66 0.62832
Target:  5'- -uGCUGCaGGCCGUCUccaGGCgcgaCGUGGCCa -3'
miRNA:   3'- cuUGGCG-CUGGCGGA---CCGg---GCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 103119 0.66 0.6185
Target:  5'- cGGCCacgaGCGACCGCC--GUCCGaGGCCa -3'
miRNA:   3'- cUUGG----CGCUGGCGGacCGGGCgCUGG- -5'
13190 3' -62.3 NC_003401.1 + 78449 0.66 0.6185
Target:  5'- aGGCCGCGAgaGCCUcGaGuCCCGCaGACg -3'
miRNA:   3'- cUUGGCGCUggCGGA-C-C-GGGCG-CUGg -5'
13190 3' -62.3 NC_003401.1 + 15722 0.66 0.6185
Target:  5'- --uCCGCGuguucucCUGCCUGcuggaGgCCGCGGCCa -3'
miRNA:   3'- cuuGGCGCu------GGCGGAC-----CgGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 78076 0.66 0.615556
Target:  5'- --uCCGCGAuaGUCgUGGCcguaugugcgucgaCCGCGGCCa -3'
miRNA:   3'- cuuGGCGCUggCGG-ACCG--------------GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 125810 0.66 0.608689
Target:  5'- --gUCGCGGCCGUCUccaCCGaCGACCu -3'
miRNA:   3'- cuuGGCGCUGGCGGAccgGGC-GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 23640 0.66 0.608689
Target:  5'- -cGCCGCGAgCgGCCggcaggUGGCgCCGCGcuuucccccacGCCg -3'
miRNA:   3'- cuUGGCGCU-GgCGG------ACCG-GGCGC-----------UGG- -5'
13190 3' -62.3 NC_003401.1 + 123518 0.66 0.599874
Target:  5'- gGGGCCGCG-CCGC--GGCCaaaccgccuauaugaGUGACCa -3'
miRNA:   3'- -CUUGGCGCuGGCGgaCCGGg--------------CGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 66553 0.66 0.598895
Target:  5'- uGAGCCGUGcCUGCCgcauucacGGCCUuaGCG-CCg -3'
miRNA:   3'- -CUUGGCGCuGGCGGa-------CCGGG--CGCuGG- -5'
13190 3' -62.3 NC_003401.1 + 118347 0.66 0.598895
Target:  5'- --cCCGCGgugccGCCGCCggggucGCCCGCGGg- -3'
miRNA:   3'- cuuGGCGC-----UGGCGGac----CGGGCGCUgg -5'
13190 3' -62.3 NC_003401.1 + 23785 0.66 0.597917
Target:  5'- aGGGCCGCG-CCGgUUGGCggauaauaugaaaCCggcGCGGCCa -3'
miRNA:   3'- -CUUGGCGCuGGCgGACCG-------------GG---CGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 8401 0.66 0.589123
Target:  5'- cGACUGC-ACCGCCUcGGauCCCGCGGu- -3'
miRNA:   3'- cUUGGCGcUGGCGGA-CC--GGGCGCUgg -5'
13190 3' -62.3 NC_003401.1 + 98578 0.66 0.587172
Target:  5'- uAACCGacauacaGACCGCCgaaccagaccagGGuCCCGUGuCCg -3'
miRNA:   3'- cUUGGCg------CUGGCGGa-----------CC-GGGCGCuGG- -5'
13190 3' -62.3 NC_003401.1 + 19957 0.67 0.579381
Target:  5'- uGAGCCaccuguGUGuuCGCgaGGCgCGCGACCc -3'
miRNA:   3'- -CUUGG------CGCugGCGgaCCGgGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132576 0.67 0.579381
Target:  5'- -uGCCggGCGGCCGCCgcccGGCauggcgguccuCCGcCGGCCu -3'
miRNA:   3'- cuUGG--CGCUGGCGGa---CCG-----------GGC-GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 37059 0.67 0.579381
Target:  5'- gGAACCGCaGCgGCCuUGGCuUCGCGGu- -3'
miRNA:   3'- -CUUGGCGcUGgCGG-ACCG-GGCGCUgg -5'
13190 3' -62.3 NC_003401.1 + 90901 0.67 0.569672
Target:  5'- cGGCCGCGGguaCGCUgucuguUGGCCUGaCGACg -3'
miRNA:   3'- cUUGGCGCUg--GCGG------ACCGGGC-GCUGg -5'
13190 3' -62.3 NC_003401.1 + 80167 0.67 0.569672
Target:  5'- uAGgCGCG-CCuugGCCUGGCCCaGCcuaGACCu -3'
miRNA:   3'- cUUgGCGCuGG---CGGACCGGG-CG---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.