miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13191 3' -56.1 NC_003401.1 + 117621 0.66 0.88415
Target:  5'- -uGGCCGCCGCgGGuuaGUUUGauugacGGCu -3'
miRNA:   3'- agUCGGCGGUGgUCug-CAAACgu----CCG- -5'
13191 3' -56.1 NC_003401.1 + 23528 0.66 0.88415
Target:  5'- --cGCCGCagaggagGCCGGugGUggcGCuGGCg -3'
miRNA:   3'- aguCGGCGg------UGGUCugCAaa-CGuCCG- -5'
13191 3' -56.1 NC_003401.1 + 96720 0.66 0.88415
Target:  5'- aCAGUCG-CGCCAG-CGac-GUAGGCg -3'
miRNA:   3'- aGUCGGCgGUGGUCuGCaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 49263 0.66 0.88415
Target:  5'- aUCuGUCGCCAUaagGGACGUgccugGUAGGg -3'
miRNA:   3'- -AGuCGGCGGUGg--UCUGCAaa---CGUCCg -5'
13191 3' -56.1 NC_003401.1 + 102789 0.66 0.88415
Target:  5'- -aGGCUGCCcCCAG-CGUUUGgAGcGUu -3'
miRNA:   3'- agUCGGCGGuGGUCuGCAAACgUC-CG- -5'
13191 3' -56.1 NC_003401.1 + 82483 0.66 0.877003
Target:  5'- aCAGCCaugGCCAgaacaucuCCGGACGga-GCGGcGCu -3'
miRNA:   3'- aGUCGG---CGGU--------GGUCUGCaaaCGUC-CG- -5'
13191 3' -56.1 NC_003401.1 + 66672 0.66 0.877003
Target:  5'- uUCAGCUuaggugGCCugCAGGCuugcUGaCAGGCc -3'
miRNA:   3'- -AGUCGG------CGGugGUCUGcaa-AC-GUCCG- -5'
13191 3' -56.1 NC_003401.1 + 49066 0.66 0.869633
Target:  5'- cCGGgaGCaccaGCCAGGCGgucaggGUAGGCg -3'
miRNA:   3'- aGUCggCGg---UGGUCUGCaaa---CGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 72638 0.66 0.869633
Target:  5'- gCGGCCacgGCCaagGCCGuGACGc--GCGGGCa -3'
miRNA:   3'- aGUCGG---CGG---UGGU-CUGCaaaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 101447 0.66 0.868132
Target:  5'- aCGGCuCGCCcguuuuguuuguCCgAGAUGUUUGgCAGGUg -3'
miRNA:   3'- aGUCG-GCGGu-----------GG-UCUGCAAAC-GUCCG- -5'
13191 3' -56.1 NC_003401.1 + 122435 0.66 0.865105
Target:  5'- gCGGCCGCUGCCGaaaccaacgccgcuuGAauUUcGCGGGCg -3'
miRNA:   3'- aGUCGGCGGUGGU---------------CUgcAAaCGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 117819 0.66 0.85345
Target:  5'- -gGGCCGCCGgCagGGACGUUUcccauugGCcGGCc -3'
miRNA:   3'- agUCGGCGGUgG--UCUGCAAA-------CGuCCG- -5'
13191 3' -56.1 NC_003401.1 + 126466 0.67 0.846234
Target:  5'- gUCucuuGCCGagucccaccCUACCGGACGUU--CAGGCg -3'
miRNA:   3'- -AGu---CGGC---------GGUGGUCUGCAAacGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 27906 0.67 0.846234
Target:  5'- aCAGCCG-UACCAGAgCGc--GCAGGg -3'
miRNA:   3'- aGUCGGCgGUGGUCU-GCaaaCGUCCg -5'
13191 3' -56.1 NC_003401.1 + 23981 0.67 0.846234
Target:  5'- aUUGGCUGCCGCCAG-CGUccaauGGCc -3'
miRNA:   3'- -AGUCGGCGGUGGUCuGCAaacguCCG- -5'
13191 3' -56.1 NC_003401.1 + 115235 0.67 0.846234
Target:  5'- -aAGUC-CC-CCGGugGggUGCAGGUc -3'
miRNA:   3'- agUCGGcGGuGGUCugCaaACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 114893 0.67 0.846234
Target:  5'- -aAGUC-CC-CCGGugGggUGCAGGUc -3'
miRNA:   3'- agUCGGcGGuGGUCugCaaACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 110653 0.67 0.844608
Target:  5'- cCAGuuGCCACgGGACGaacauaauggGUAGGa -3'
miRNA:   3'- aGUCggCGGUGgUCUGCaaa-------CGUCCg -5'
13191 3' -56.1 NC_003401.1 + 84481 0.67 0.838027
Target:  5'- cCAGCCGUuguCGCCuacugcguggagAGAgGUcUGCAGGUu -3'
miRNA:   3'- aGUCGGCG---GUGG------------UCUgCAaACGUCCG- -5'
13191 3' -56.1 NC_003401.1 + 39229 0.67 0.838027
Target:  5'- --cGCUGCCACCguagcaGGACac--GCGGGCa -3'
miRNA:   3'- aguCGGCGGUGG------UCUGcaaaCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.