miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13248 3' -47.4 NC_003401.1 + 26891 0.66 0.999518
Target:  5'- ----uGCCGCACCGCGguaaCAc-UGCGg -3'
miRNA:   3'- uuuuuUGGUGUGGCGUag--GUauACGC- -5'
13248 3' -47.4 NC_003401.1 + 106889 0.66 0.999518
Target:  5'- cGAGAGGCUACGCCGgCGUU----UGCGg -3'
miRNA:   3'- -UUUUUUGGUGUGGC-GUAGguauACGC- -5'
13248 3' -47.4 NC_003401.1 + 132239 0.66 0.999394
Target:  5'- ----cGCCGgGCCGCGgccgCCAUcuUGCGc -3'
miRNA:   3'- uuuuuUGGUgUGGCGUa---GGUAu-ACGC- -5'
13248 3' -47.4 NC_003401.1 + 74729 0.66 0.999394
Target:  5'- cAGAGAugUGCACCGCcgCCcuUcgGCa -3'
miRNA:   3'- -UUUUUugGUGUGGCGuaGGu-AuaCGc -5'
13248 3' -47.4 NC_003401.1 + 132552 0.66 0.999245
Target:  5'- --cAAGCCGCGgCGCGcggcUCCcgAUGCc -3'
miRNA:   3'- uuuUUUGGUGUgGCGU----AGGuaUACGc -5'
13248 3' -47.4 NC_003401.1 + 91933 0.66 0.999245
Target:  5'- uAGAAACCACACCcaCGUCCA---GCu -3'
miRNA:   3'- uUUUUUGGUGUGGc-GUAGGUauaCGc -5'
13248 3' -47.4 NC_003401.1 + 52620 0.66 0.999245
Target:  5'- ----cACCAUacgaGCCGCGUCCGagcacgGCGg -3'
miRNA:   3'- uuuuuUGGUG----UGGCGUAGGUaua---CGC- -5'
13248 3' -47.4 NC_003401.1 + 122829 0.66 0.999064
Target:  5'- ---cGugCACucuACCGCGUCCcugggGUGCGu -3'
miRNA:   3'- uuuuUugGUG---UGGCGUAGGua---UACGC- -5'
13248 3' -47.4 NC_003401.1 + 80981 0.66 0.999064
Target:  5'- ----cGCCAUgagACUGCGUUaCGUGUGCGa -3'
miRNA:   3'- uuuuuUGGUG---UGGCGUAG-GUAUACGC- -5'
13248 3' -47.4 NC_003401.1 + 40810 0.66 0.999064
Target:  5'- -----cCCACACgGCAUCgGguUGUGCa -3'
miRNA:   3'- uuuuuuGGUGUGgCGUAGgU--AUACGc -5'
13248 3' -47.4 NC_003401.1 + 101605 0.66 0.999064
Target:  5'- uGAGGGCCACGCaCGCAg----AUGCGc -3'
miRNA:   3'- uUUUUUGGUGUG-GCGUagguaUACGC- -5'
13248 3' -47.4 NC_003401.1 + 21023 0.66 0.998848
Target:  5'- cGGAGGACC---CCGCGUCCGUuuccGCGg -3'
miRNA:   3'- -UUUUUUGGuguGGCGUAGGUAua--CGC- -5'
13248 3' -47.4 NC_003401.1 + 116707 0.67 0.998591
Target:  5'- ---cGACCAUGCUGCGccCCGUauucGUGCGg -3'
miRNA:   3'- uuuuUUGGUGUGGCGUa-GGUA----UACGC- -5'
13248 3' -47.4 NC_003401.1 + 105677 0.67 0.998591
Target:  5'- -cAAAACCACGCCGUcuAUCguCGUGaGCGc -3'
miRNA:   3'- uuUUUUGGUGUGGCG--UAG--GUAUaCGC- -5'
13248 3' -47.4 NC_003401.1 + 38706 0.67 0.998286
Target:  5'- --cGAACUGCAUCGCGUCCAaacgGUa -3'
miRNA:   3'- uuuUUUGGUGUGGCGUAGGUaua-CGc -5'
13248 3' -47.4 NC_003401.1 + 82802 0.67 0.997022
Target:  5'- --uGAAUCGuccaACgGCAUCCGUGUGCu -3'
miRNA:   3'- uuuUUUGGUg---UGgCGUAGGUAUACGc -5'
13248 3' -47.4 NC_003401.1 + 127489 0.67 0.997022
Target:  5'- aGGAGGGCCGCA-CGCAUCUgcggAUGCc -3'
miRNA:   3'- -UUUUUUGGUGUgGCGUAGGua--UACGc -5'
13248 3' -47.4 NC_003401.1 + 118888 0.68 0.996458
Target:  5'- gAGGAAGCCGCGCCGcCAagCGgc-GCGg -3'
miRNA:   3'- -UUUUUUGGUGUGGC-GUagGUauaCGC- -5'
13248 3' -47.4 NC_003401.1 + 85152 0.68 0.996458
Target:  5'- -----cCCACACgUGCAUCCcgGUGUa -3'
miRNA:   3'- uuuuuuGGUGUG-GCGUAGGuaUACGc -5'
13248 3' -47.4 NC_003401.1 + 118131 0.68 0.996273
Target:  5'- cAAAAGCCGCcccaugggcaccggACgGCA-CCAUGUGCa -3'
miRNA:   3'- uUUUUUGGUG--------------UGgCGUaGGUAUACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.